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Interdisciplinary CompetenceMolecular Diagnostics
Know how in the analysis of genetic material.
For the benefit of patients.

IllnessAutism II, differential diagnosis

Summary

Short information

A curated panel containing 27 core candidate genes and altogether 88 genes for the comprehensively orientating analysis of inherited autism spectrum diseases

ID
AP9998
Number of genes
86 Accredited laboratory test
Examined sequence length
130,2 kb (Core-/Core-canditate-Genes)
378,9 kb (Extended panel: incl. additional genes)
Analysis Duration
auf Anfrage
Test material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications
  1. array, 2. FRAX, 3. genes: MECP2, PTEN recommende in ACMG guidelines NGS + [Sanger]

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
ADNP3309NM_015339.5AD
ANK211874NM_001148.6AD
ARID1B6750NM_001374820.1n.k.
ASH1L8895NM_018489.3AD
ASXL36747NM_030632.3AD
CHD25487NM_001271.4n.k.
CHD87746NM_001170629.2AD
CUL32307NM_003590.5n.k.
DSCAM5985NM_001389.5n.k.
DYRK1A2292NM_001396.5AD
GRIN2B4455NM_000834.5AD
KATNAL21401NM_031303.3AD
KMT2A11919NM_001197104.2Ass
KMT5B1182NM_017635.5AD
MYT1L3555NM_015025.4AD
NAA152601NM_057175.5AD
POGZ4233NM_015100.4AD
PTEN1212NM_000314.8AD
RELN10383NM_005045.4n.k.
SCN2A6018NM_021007.3Ass
SETD54329NM_001080517.3AD
SHANK35386NM_001372044.2AD
SYNGAP14032NM_006772.3n.k.
TBR12049NM_006593.4AD
TRIP125979NM_004238.3AD
ANKRD117992NM_013275.6AD
BAZ2B6792
  • No OMIM-Gs linked
NM_013450.4n.k.
BCKDK1098NM_001122957.4AR
BCL11A2322NM_018014.4AD
CACNA1D6546NM_000720.4Ass
CACNA1H7062NM_021098.3AD
CACNA2D33276NM_018398.3n.k.
CIC4827NM_015125.5AD
CNOT32262NM_014516.4AD
CNTN43081NM_001206955.2Ass
CNTNAP23996NM_014141.6n.k.
CTNND23678NM_001332.4n.k.
CUX14518NM_001202543.2Ass
DDX3X1986NM_001193416.3Ass
DEAF11698NM_021008.4n.k.
DIP2C4671NM_014974.3n.k.
ERBIN4517NM_001006600.3n.k.
FOXP12034NM_032682.6AD
GABRB31422NM_000814.6AD
GIGYF23900NM_001103146.3Sus
GRIA12721NM_000827.4AD
GRIP13231NM_021150.4AR
ILF21246NM_001267809.2n.k.
INTS62691NM_001039937.2n.k.
IRF2BPL2411NM_024496.4n.k.
KAT2B2530NM_003884.5n.k.
KDM5B4635NM_006618.5AR
KDM6A4206NM_021140.4XL
KMT2C14736NM_170606.3AD
LEO12137NM_138792.4n.k.
MAGEL23750NM_019066.5AD
MBOAT71200NM_001146056.3n.k.
MECP21461NM_004992.4XL
MED136525NM_005121.3AD
MED13L6633NM_015335.5AD
MET4227NM_001127500.3Ass
NCKAP13387NM_013436.5AD
NLGN32487NM_018977.4XL
NRXN14644NM_001135659.3n.k.
PHF36120NM_015153.4n.k.
PTCHD12667NM_173495.3XLR
RANBP173558NM_022897.5Ass
RIMS15079NM_014989.6AD
SCN9A5934NM_002977.3Ass
SHANK25404NM_012309.5AD
SLC6A11800NM_003042.4n.k.
SMARCC23459NM_003075.5AD
SPAST1851NM_014946.4Ass
SRCAP9693NM_006662.3AD
SRSF111645NM_001190987.3n.k.
TAOK24892NM_001252043.2n.k.
TBL1XR11545NM_024665.7AD
TCF205906NM_005650.4AD
TNRC6B3090NM_001024843.2AD
TRIO9294NM_007118.4AD
UBN24044NM_173569.4n.k.
UPF3B1452NM_080632.3XLR
USP152946NM_001252078.2n.k.
USP73309NM_003470.3AD
WAC1944NM_016628.5AD
WDFY310581NM_014991.6AD

Informations about the disease

Clinical Comment

Autism spectrum disorders (ASD) are developmental disorders with particular social, communication and behavioural problems. Genetic alterations are risk factors for the development of ASD in addition to other mostly unknown causes. ASDs appear in early childhood, four times more frequently in boys than girls. Inheritance is generally multifactorial, i.e. several genes interact in a complex way with each other and with environmental influences. Inconspicuous genetic findings tend to be the rule.

Reference: https://www.awmf.org/leitlinien/detail/ll/028-018.html

 

Synonyms
  • Alias: Autism spectrum disorder, ASD
  • Alias: Autistic continuum
  • Alias: Pervasive developmental disorder
  • Allelic: Cardiac arrhythmia, ankyrin-B-related (ANK2)
  • Allelic: Cone-rod dystrophy 7 (RIMS1)
  • Allelic: Deafness, AR 97 (MET)
  • Allelic: Episodic ataxia, type 9 (SCN2A)
  • Allelic: Erythermalgia, primary (SCN9A)
  • Allelic: Hyperaldosteronism, familial, type IV (CACNA1H)
  • Allelic: Insensitivity to pain, congenital (SCN9A)
  • Allelic: Long QT syndrome 4 (ANK2)
  • Allelic: Neuropathy, hereditary sensory and autonomic, type IID (SCN9A)
  • Allelic: Paroxysmal extreme pain disorder (SCN9A)
  • Allelic: Pseudohypoaldosteronism, type IIE (CUL3)
  • Allelic: Schizophrenia 15 (SHANK3)
  • Allelic: Seizures, benign familial infantile, 3 (SCN2A)
  • Allelic: Sinoatrial node dysfunction + deafness (CACNA1D)
  • Allelic: Small fiber neuropathy (SCN9A)
  • Allelic: VATER association, macrocephaly, ventriculomegaly; Susceptibility to tumor types (PTEN)
  • Adenylosuccinase deficiency (ADSL)
  • Angelman syndrome (UBE3A)
  • Asperger syndrome susceptibility, XL 1 (NKGN3)
  • Autism susceptibility 17 (SKANK2)
  • Autism susceptibility 18 (CHD8)
  • Autism susceptibility, XL 1 (NLGN3)
  • Autism susceptibility, XL 3 (MECP2)
  • Autism susceptibility, XL 4 (PTCHD1)
  • Bainbridge-Ropers syndrome (ASXL3)
  • Branched-chain ketoacid dehydrogenase kinase deficiency (BCKDK)
  • Coffin-Siris syndrome 1 (ARID1B)
  • Coffin-Siris syndrome 8 (SMARCC2)
  • Corneal dystrophy, Fuchs endothelial, 3 (TCF4)
  • Cortical dysplasia-focal epilepsy syndrome; Pitt-Hopkins like syndrome 1 (CNTNAP2)
  • Desanto-Shinawi syndrome (WAC)
  • Developmental + epileptic encephalopathy 11 (SCN2A)
  • Developmental + epileptic encephalopathy 27 (GRIN2B)
  • Developmental + epileptic encephalopathy 43 (GABRB3)
  • Developmental + epileptic encephalopathy 94 (CHD2)
  • Developmental delay with variable intellectual impairment + behavioral abnormalities (TCF20)
  • Dias-Logan syndrome (BCL11A)
  • Down syndrome + congenital heart disease [OMIM] (DSCAM)
  • Encephalopathy, neonatal severe; Angelman syndrome (MECP2)
  • Epilepsy, childhood absence, susceptibility to, 5 (GABRB3)
  • Epilepsy, childhood absence, susceptibility to, 6 (CACNA1H)
  • Epilepsy, familial temporal lobe, 7 (RELN)
  • Epilepsy, idiopathic generalized, susceptibility to, 6 (CACNA1H)
  • Floating-Harbor syndrome (SOCAP)
  • Fragile X syndrome (FMR1_CCG)
  • Fraser syndrome 3 (GRIP1)
  • Global developmental delay with speech + behavioral abnormalities (TNRC6B)
  • Global developmental delay with/-out impaired intellectual development (CUX1)
  • Hao-Fountain syndrome (USP7)
  • Helsmoortel-Van der Aa syndrome; Mental retardation AD, 28 (ADNP)
  • Impaired intellectual development, distinctive facial features with/-out cardiac defects (MED13L)
  • Intellectual developmental disorder 61 (MED13)
  • Intellectual developmental disorder with autism + speech delay (TBR1)
  • Intellectual developmental disorder with speech delay, autism, dysmorphic facies (CNOT3)
  • Intellectual developmental disorder, AD 44, with microcephaly (TRIO)
  • Intellectual developmental disorder, AD 50, with behavioral abnormalities (NAA15)
  • Intellectual developmental disorder, AD 6, with/-out seizures (GRIN2B)
  • Intellectual developmental disorder, AD 63, with macrocephaly (TRIO)
  • Intellectual developmental disorder, AD 64 (ZNF292)
  • Intellectual developmental disorder, XL 72 (RAB398)
  • Intellectual developmental disorder, XL syndrome, Snijders Blok type (DDX3X)
  • Intellectual developmental disorder, XL syndromic 13 (MECP2)
  • Intellectual developmental disorder, XL syndromic 14 (UPF3)
  • Intellectual developmental disorder, XL syndromic 14 (UPF3B)
  • Intellectual developmental disorder, XL syndromic, Lubs type (MECP2)
  • KBG syndrome (ANKRD11)
  • Kabuki syndrome 2 (KDM6A)
  • Kleefstra syndrome 2 (KMT2C)
  • Lissencephaly 2, Norman-Roberts type (RELN)
  • Lujan-Fryns syndrome (MED12)
  • Macrocephaly/autism syndrome (PTEN)
  • Mental retardation with language impairment + autistic features, MRLIAF (FOXP1)
  • Mental retardation, AD 23 (SETD5)
  • Mental retardation, AD 26 (AUTS2)
  • Mental retardation, AD 39 (MYT1L)
  • Mental retardation, AD 41 (TBL1XR1)
  • Mental retardation, AD 45 (CIC)
  • Mental retardation, AD 49 (TRIP12)
  • Mental retardation, AD 5 (SYNGAP1)
  • Mental retardation, AD 51 (KMT5B)
  • Mental retardation, AD 52 (ASH1L)
  • Mental retardation, AD 7 (DYRK1A)
  • Mental retardation, AR 57 (MBOAT7)
  • Mental retardation, AR 65 (KDM5B)
  • Microcephaly 18, primary, AD (WDFY3)
  • Myoclonic-atonic epilepsy (SLC6A1)
  • Neurodevelopmental disorder with hypotonia, impaired expressive language +/- seizures (DEAF1)
  • Neurodevelopmental disorder with regression, abnormal movements, loss of speech, seizures (IRF2BPL)
  • Neurodevelopmental disorder with/-out autism or seizures (CUL3)
  • Ohdo syndrome, XL (MED12)
  • Opitz-Kaveggia syndrome (MED12)
  • Parkinson disease 11 (GIGYF2)
  • Phelan-McDermid syndrome - Rett syndrome-like phenotype (SHANK3)
  • Phenylketonuria (PAH)
  • Pierpont syndrome (TBL1XR1)
  • Pitt-Hopkins syndrome (TCF4)
  • Pitt-Hopkins-like syndrome 2 (NRXN1)
  • Primary aldosteronism, seizures, + neurologic abnormalities (CACNA1D)
  • Rett syndrome (MECP2)
  • Rett syndrome, atypical (MECP2)
  • Rett syndrome, preserved speech variant (MECP2)
  • Schaaf-Yang syndrome (MAGEL2)
  • Schizophrenia 15 (SHANK3)
  • Schizophrenia, susceptibility to, 17 (NRXN1)
  • Smith-Lemli-Opitz syndrome (DHCR7)
  • Spastic paraplegia 4, AD (SPAST)
  • Syndromic intellectual disability (AUTS2)
  • Tourette syndrome; Epileptic encephalopathy, childhood-onset (CHD2)
  • Tuberous sclerosis-1 + -2 (TSC1, TSC2)
  • Vulto-van Silfout-de Vries syndrome (DEAF1)
  • Waisman syndrome (RAB398)
  • White-Sutton syndrome (POGZ)
  • Wiedemann-Steiner syndrome (KMT2A)
Heredity, heredity patterns etc.
  • AD
  • AR
  • Ass
  • Sus
  • XL
  • XLR
  • n.k.
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined