IllnessBone marrow dysfunction, hereditary; differential diagnosis
Summary
Short information
Comprehensive differential diagnostic panel for inherited bone marrow dysfunction containing 11 core candidate genes and altogether >150 curated genes according to the clinical signs
ID
KP4958
Number of genes
80
Accredited laboratory test
Examined sequence length
24,0 kb (Core-/Core-canditate-Genes)
171,6 kb (Extended panel: incl. additional genes)
171,6 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
- EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications
NGS +
[Sanger]
Gene panel
Selected genes
Name | Exon Length (bp) | OMIM-G | Referenz-Seq. | Heredity |
---|---|---|---|---|
BRCA2 | 10257 | NM_000059.4 | AR | |
BRIP1 | 3750 | NM_032043.3 | AR | |
DKC1 | 1545 | NM_001363.5 | XLR | |
ELANE | 804 | NM_001972.4 | AD | |
GFI1 | 1269 | NM_005263.5 | AD | |
HAX1 | 840 | NM_006118.4 | AR | |
PALB2 | 3561 | NM_024675.4 | AR | |
RPL35A | 333 | NM_000996.4 | AD | |
RPS19 | 438 | NM_001022.4 | AD | |
RPS24 | 393 | NM_033022.4 | AD | |
SBDS | 753 | NM_016038.4 | AR | |
ABCB7 | 2259 | NM_004299.6 | XLR | |
ATM | 9171 | NM_000051.4 | AR | |
BRCA1 | 5592 | NM_007294.4 | AR | |
CBL | 2721 | NM_005188.4 | AD | |
CD59 | 387 | NM_000611.6 | AR | |
CEBPA | 1077 | NM_004364.5 | AD | |
CSF3R | 2511 | NM_000760.4 | AD, AR | |
CTC1 | 3654 | NM_025099.6 | AR | |
CXCR4 | 1059 | NM_003467.3 | AD | |
DNAJC21 | 2049 | NM_001012339.3 | AR | |
EFL1 | 3382 | NM_001040610.3 | AR | |
ERCC4 | 2751 | NM_005236.3 | AR | |
ERCC6L2 | 2106 | NM_001010895.4 | AR | |
FANCA | 4368 | NM_000135.4 | AR | |
FANCB | 2580 | NM_001018113.3 | XL | |
FANCC | 1677 | NM_000136.3 | AR | |
FANCE | 1611 | NM_021922.3 | AR | |
FANCF | 1125 | NM_022725.4 | AR | |
FANCG | 1869 | NM_004629.2 | AR | |
FANCI | 3987 | NM_001113378.2 | AR | |
FANCL | 1128 | NM_018062.4 | AR | |
FANCM | 6147 | NM_020937.4 | AR | |
FLT3 | 2982 | NM_004119.3 | AD, SMu | |
G6PC3 | 1041 | NM_138387.4 | AR | |
GATA1 | 1242 | NM_002049.4 | XLR | |
GATA2 | 1443 | NM_032638.5 | AD | |
GLRX5 | 474 | NM_016417.3 | AR | |
HBA1 | 429 | NM_000558.5 | AD, AR | |
HBA2 | 429 | NM_000517.6 | AD, AR | |
HBB | 444 | NM_000518.5 | AD, AR | |
MLH1 | 2271 | NM_000249.4 | AR | |
MPL | 1908 | NM_005373.3 | AR | |
MSH2 | 2805 | NM_000251.3 | AR | |
MSH6 | 4083 | NM_000179.3 | AR | |
NBN | 2265 | NM_002485.5 | AR, Sus | |
NF1 | 8457 | NM_001042492.3 | AD | |
NHP2 | 273 | NM_001034833.2 | AR | |
NOP10 | 195 | NM_018648.4 | AR | |
PARN | 1920 | NM_002582.4 | AD, AR | |
PMS2 | 2589 | NM_000535.7 | AR | |
PRF1 | 1668 | NM_001083116.3 | AR | |
PTPN11 | 1782 | NM_002834.5 | AD | |
RAD51C | 1131 | NM_058216.3 | AR | |
RAP1B | 555 | NM_015646.6 | AD | |
RMRP | 300 | NR_003051.3 | AR | |
RPL11 | 537 | NM_000975.5 | AD | |
RPL5 | 894 | NM_000969.5 | AD | |
RPS17 | 408 | NM_001021.6 | AD | |
RPS26 | 348 | NM_001029.5 | AD | |
RPS29 | 204 | NM_001030001.4 | AD | |
RPS7 | 585 | NM_001011.4 | AD | |
RTEL1 | 3732 | NM_032957.5 | AD, AR | |
SAMD9 | 4770 | NM_001193307.2 | AD | |
SAMD9L | 4756 | NM_152703.5 | AD | |
SLC2A1 | 1479 |
| NM_006516.4 | AD |
SLC4A1 | 2736 | NM_000342.4 | AD | |
SLX4 | 5505 | NM_032444.4 | AR | |
STN1 | 1221 | NM_024928.5 | AD | |
TAFAZZIN | 879 | NM_000116.5 | XLR | |
TCN2 | 1284 | NM_000355.4 | AR | |
TERT | 3399 | NM_198253.3 | AR, AD | |
TINF2 | 1356 | NM_001099274.3 | AD | |
TP53 | 1182 | NM_000546.6 | AD | |
VPS45 | 1617 | NM_007259.5 | AR | |
WAS | 1509 | NM_000377.3 | XLR | |
WIPF1 | 1512 | NM_001077269.1 | AR | |
WRAP53 | 1647 | NM_001143990.2 | AR | |
XK | 1335 | NM_021083.4 | XL | |
XRCC2 | 843 | NM_005431.2 | AR |
Informations about the disease
Clinical Comment
Triphasic, at 2-5 years (inherited most common), between 20-25 years, after 65 years (acquired causes); inherited 10%-15%, 30% pediatric -> 65/1 000 000 live births/y.
Synonyms
- Alias: Bone marrow failure syndromes, inherited
- Allelic: AIDS, rapid progression to (IFNG)
- Allelic: Breast-ovarian cancer, familial, 1 (BRCA1)
- Allelic: Cartilage-hair hypoplasia (RMRP)
- Allelic: Dyskeratosis congenita, AD 2 (TERT)
- Allelic: Dyskeratosis congenita, AD 4 (RTEL1)
- Allelic: Dyskeratosis congenita, AR 4 (TERT)
- Allelic: Dyskeratosis congenita, AR 5 (RTEL1)
- Allelic: Emberger syndrome (GATA2)
- Allelic: Hepatitis C virus, response to therapy of (IFNG)
- Allelic: Immunodeficiency 21 (GATA2)
- Allelic: Immunodeficiency 69, mycobacteriosis (IFNG)
- Allelic: Juvenile myelomonocytic leukemia (CBL)
- Allelic: Leukemia, acute lymphoblastic (NBN)
- Allelic: Leukemia, acute myeloid (TERT)
- Allelic: Leukemia, acute myeloid, susceptibility to (GATA2)
- Allelic: Leukemia, megakaryoblastic, with/-out Down syndrome, somatic (GATA1)
- Allelic: Melanoma, cutaneous malignant, 9 (TERT)
- Allelic: Metaphyseal dysplasia without hypotrichosis (RMRP)
- Allelic: Monosomy 7 myelodysplasia + leukemia syndrome 2 (SAMD9)
- Allelic: Myocardial infarction, susceptibility to (GCLC)
- Allelic: Neural tube defects, folate-sensitive, susceptibility to (MTR)
- Allelic: Neural tube defects, folate-sensitive, susceptibility to (MTRR)
- Allelic: Neurodevelopmental disorder with visual defects + brain anomalies (HK1)
- Allelic: Neuropathy, hereditary motor + sensory, Russe type (HK1)
- Allelic: Nijmegen breakage syndrome (NBN)
- Allelic: Noonan syndrome-like disorder with or without juvenile myelomonocytic leukemia (CBL)
- Allelic: Pancreatic cancer, susceptibility to, 4 (BRCA1)
- Allelic: Proteinuria, chronic benign (CUBN)
- Allelic: Resistance to malaria due to G6PD deficiency (G6PD)
- Allelic: Retinitis pigmentosa 79 (HK1)
- Allelic: TSC2 angiomyolipomas, renal, modifier of (IFNG)
- Allelic: Thrombocythemia 2 (MPL)
- Allelic: Thrombocytopenia with beta-thalassemia, XL (GATA1)
- Allelic: Thrombocytopenia, XL (WAS)
- Allelic: Thrombocytopenia, XL, intermittent (WAS)
- Allelic: Thrombocytopenia, XL, with /-out dyserythropoietic anemia (GATA1)
- Allelic: Thrombocytopenia, congenital amegakaryocytic (MPL)
- Allelic: Tuberculosis, protection against (IFNG)
- Allelic: Tumoral calcinosis, familial, normophosphatemic (SAMD9)
- Allelic: Wilms tumor (BRCA2)
- Allelic: Wiskott-Aldrich syndrome (WAS)
- Allelic: XFE progeroid syndrome (ERCC4)
- Allelic: Xeroderma pigmentosum, group F (ERCC4)
- Allelic: Xeroderma pigmentosum, type F/Cockayne syndrome (ERCC4)
- Acute myeloid leukaemia [panelapp] (NPM1)
- Adenosine triphosphate, elevated, of erythrocytes (PKLR)
- Allelic: Cowden syndrome 7 (SEC23B
- Allelic: Distal renal tubular acidosis 1 (SLC4A1)
- Allelic: Dystonia 9 (SLC2A1)
- Allelic: Epilepsy, idiopathic generalized, susceptibility to, 12 (SLC2A1)
- Allelic: Lymphatic malformation 6 (PIEZO1)
- Allelic: Stomatin-deficient cryohydrocytosis with neurologic defects (SLC2A1)
- Alpha-thalassemia/mental retardation syndrome (ATRX)
- Anauxetic dysplasia 1 (RMRP)
- Anemia, XL, with/-out neutropenia and/or platelet abnormalities (GATA1)
- Anemia, hemolytic, Rh-null, regulator type (RHAG)
- Anemia, hemolytic, due to UMPH1 deficiency (NT5C3A)
- Anemia, hypochromic microcytic, with iron overload 1 (SLC11A2)
- Anemia, neonatal hemolytic, fatal or near-fatal (SPTB)
- Anemia, sideroblastic, 1 (ALAS2)
- Anemia, sideroblastic, 2, pyridoxine-refractory (SLC25A38)
- Anemia, sideroblastic, with ataxia (ABCB7)
- Aplastic anemia (IFNG; NBN, PRF1, SBDS)
- Aplastic anemia, susceptibility to (SBDS)
- Ataxia-pancytopenia syndrome (SAMD9L)
- Atransferrinemia (TF)
- Bone marrow failure syndrome 2 (ERCC6L2)
- Bone marrow failure syndrome 3 (DNAJC21)
- Congenital dyserythropoietic anemia type III [panelapp] (KIF23)
- Cryohydrocytosis (SLC4A1)
- Dehydrated hereditary stomatocytosis with/-out pseudohyperkalemia +/- perinatal edema (PIEZO1)
- Diamond-Blackfan anemia 1 (RPS19)
- Diamond-Blackfan anemia 10 (RPS26)
- Diamond-Blackfan anemia 13 (RPS29)
- Diamond-Blackfan anemia 4 (RPS17)
- Diamond-Blackfan anemia 5 (RPL35A)
- Diamond-Blackfan anemia 6 (RPL5)
- Diamond-Blackfan anemia 7 (RPL11)
- Diamond-Blackfan anemia 8 (RPS7)
- Diamond-Blackfan anemia 9 (RPS10)
- Diamond-blackfan anemia 3 (RPS24)
- Distal renal tubular acidosis 4 with hemolytic anemia (SLC4A1)
- Dyserythropoietic anemia, congenital, type II (SEC23B)
- Dyserythropoietic anemia, congenital, type Ia (CDAN1)
- Dyserythropoietic anemia, congenital, type Ib (C15orf41 syn. CDIN1)
- Dyskeratosis congenita, AD 3 (TINF2)
- Dyskeratosis congenita, AR 2 (NHP2)
- Dyskeratosis congenita, AR 3 (WRAP53)
- Dyskeratosis congenita, XL (DKC1)
- Elliptocytosis-1 (EPB41)
- Elliptocytosis-2 (SPTA1)
- Elliptocytosis-3 (SPTB)
- Exocrine pancreatic insufficiency, dyserythropoietic anemia + calvarial hyperostosis (COX4I2)
- Familial MDS; Myelodysplastic syndromes (CEBPA)
- Fanconi anemia, complementation group A (FANCA)
- Fanconi anemia, complementation group B (FANCB)
- Fanconi anemia, complementation group C (FANCC)
- Fanconi anemia, complementation group D1 (BRCA2)
- Fanconi anemia, complementation group D2 (FANCD2)
- Fanconi anemia, complementation group E (FANCE)
- Fanconi anemia, complementation group F (FANCF)
- Fanconi anemia, complementation group G (FANCG)
- Fanconi anemia, complementation group I (FANCI)
- Fanconi anemia, complementation group J (BRIP)
- Fanconi anemia, complementation group L (FANCL)
- Fanconi anemia, complementation group N (PALB2)
- Fanconi anemia, complementation group O (RAD51C)
- Fanconi anemia, complementation group P (SLX4)
- Fanconi anemia, complementation group Q (ERCC4)
- Fanconi anemia, complementation group S (BRCA1)
- Fanconi anemia, complementation group T (UBE2T)
- GLUT1 deficiency syndrome 1, infantile onset, severe (SLC2A1)
- GLUT1 deficiency syndrome 2, childhood onset (SLC2A1)
- Glycogen storage disease VII (PFKM)
- Glycogen storage disease XII (ALDOA)
- Hemolytic anemia due to adenylate kinase deficiency (AK1)
- Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency (GCLC)
- Hemolytic anemia due to hexokinase deficiency (HK1)
- Hemolytic anemia due to triosephosphate isomerase deficiency (TPI1)
- Hemolytic anemia, CD59-mediated, with/-out immune-mediated polyneuropathy (CD59)
- Hemolytic anemia, G6PD deficient; favism (G6PD)
- Homocystinuria-megaloblastic anemia, cbl E type (MTRR)
- Homocystinuria-megaloblastic anemia, cblG complementation type (MTR)
- Imerslund-Grasbeck syndrome 1 (CUBN)
- Imerslund-Grasbeck syndrome 2 (AMN)
- Immunodeficiency 52 (LAT)
- Immunodeficiency, common variable, 13 (IKZF1)
- Iron-refractory iron deficiency anemia (TMPRSS6)
- MIRAGE s. [myelodyspl., infection, growth restr., adr. hypoplasia, genit. abn., enteropathy] (SAMD9)
- Majeed syndrome (LPIN2)
- Megaloblastic anemia due to dihydrofolate reductase deficiency (DHFR)
- Mental retardation-hypotonic facies syndrome, XL (ATRX)
- Monosomy 7 myelodysplasia and leukemia syndrome 1 (SAMD9L)
- Myelodysplastic syndrome (MDS), Paediatric (CBL)
- Myelodysplastic syndrome (MDS), Paediatric (FLT3)
- Myelodysplastic syndrome, susceptibility to (GATA2)
- Myelofibrosis with myeloid metaplasia, somatic (MPL)
- Myelokathexis, isolated (CXCR4)
- Myopathy, lactic acidosis + sideroblastic anemia 1 (PUS1)
- Myopathy, lactic acidosis + sideroblastic anemia 2 (YARS2)
- Neutropenia, cyclic (ELANE)
- Neutropenia, nonimmune chronic idiopathic, of adults (GFI1)
- Neutropenia, severe congenital 1, AD (ELANE)
- Neutropenia, severe congenital 2, AD (GFI1)
- Neutropenia, severe congenital 3, AR (HAX1)
- Neutropenia, severe congenital 5, AR (VPS45)
- Neutropenia, severe congenital 7, AR (CSF3R)
- Neutropenia, severe congenital, XL (WAS)
- Noonan syndrome-like disorder with/-out juvenile myelomonocytic leukemia (CBL)
- Ovalocytosis, SA type (SLC4A1)
- Overhydrated hereditary stomatocytosis (RHAG)
- Porphyria, congenital erythropoietic (UROS)
- Protoporphyria, erythropoietic, XL (ALAS2)
- Pulmonary fibrosis and/or bone marrow failure, telomere-related, 1 (TERT)
- Pulmonary fibrosis and/or bone marrow failure, telomere-related, 3 (RTEL)
- Pyropoikilocytosis (SPTA1)
- Pyruvate kinase deficiency (PKLR)
- Radioulnar synostosis with amegakaryocytic thrombocytopenia 1 (HOXA11)
- Revesz syndrome (TINF2)
- Shwachman-Diamond syndrome (SBDS)
- Shwachman-Diamond syndrome 2 (EFL1)
- Sneddon syndrome (ADA2)
- Spherocytosis, type 1 (ANK1)
- Spherocytosis, type 2 (SPTB)
- Spherocytosis, type 3 (SPTA1)
- Spherocytosis, type 4 (SLC4A1)
- Spherocytosis, type 5 (EPB42)
- Syndromic intellectual disability; cytopenia [panelapp] (RAP1B)
- Thiamine-responsive megaloblastic anemia syndrome (SLC19A2)
- Thrombotic thrombocytopenic purpura, hereditary (ADAMTS13)
- Transcobalamin II deficiency (TCN2)
- Vasculitis, autoinflammation, immunodeficiency + hematologic defects syndrome (ADA2)
- WHIM syndrome (CXCR4)
- [Blood groups Diego, Froese, Swann, Waldner, Wright (SLC4A1)
- [Malaria, resistance to (SLC4A1)
Heredity, heredity patterns etc.
- AD
- AR
- SMu
- Sus
- XL
- XLR
OMIM-Ps
- Multiple OMIM-Ps
ICD10 Code
Bioinformatics and clinical interpretation
No text defined