IllnessBrain malformations, congenital; differential diagnosis
Summary
Short information
A curated panel containing 78 genes for the comprehensive analysis of practically all known connatal brain malformations
ID
HP1100
Number of genes
82
Accredited laboratory test
Examined sequence length
35,9 kb (Core-/Core-canditate-Genes)
222,5 kb (Extended panel: incl. additional genes)
222,5 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
- EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications
NGS +
Gene panel
Selected genes
Name | Exon Length (bp) | OMIM-G | Referenz-Seq. | Heredity |
---|---|---|---|---|
ACTB | 1128 | NM_001101.5 | AD | |
AKT3 | 1440 | NM_005465.7 | AD | |
DCX | 1083 | NM_178153.3 | XL | |
DISP1 | 4575 | NM_032890.5 | AD | |
KIF5C | 2874 | NM_004522.3 | AD | |
MTOR | 7650 | NM_004958.4 | AD | |
NEDD4L | 2868 | NM_015277.6 | AD | |
PIK3CA | 3207 | NM_006218.4 | AD | |
PIK3R2 | 2187 | NM_005027.4 | AD | |
PROK2 | 390 | NM_001126128.2 | AR | |
PROKR2 | 1155 | NM_144773.4 | AD, AR | |
TUBB2B | 1338 | NM_178012.5 | AD | |
TUBG1 | 1356 | NM_001070.5 | AD | |
WDR62 | 4572 | NM_001083961.2 | AR | |
ACTG1 | 1128 | NM_001614.5 | AD | |
ADGRG1 | 2064 | NM_005682.7 | AR | |
AKT1 | 1443 | NM_005163.2 | n.k. | |
ARFGEF2 | 5358 | NM_006420.3 | AR | |
ASPM | 10434 | NM_018136.5 | AR | |
B3GALNT2 | 1503 | NM_152490.5 | AR | |
CCND2 | 870 | NM_001759.4 | AD | |
CDK13 | 4711 | NM_003718.5 | AD | |
CDON | 3795 | NM_016952.5 | AD | |
COL3A1 | 4401 | NM_000090.4 | AD, AR | |
CRPPA | 1356 | NM_001101426.4 | AR | |
CSNK2A1 | 1545 | NM_001895.4 | AD | |
DAG1 | 2688 | NM_004393.6 | AR | |
DHCR7 | 1428 | NM_001360.3 | AR | |
DYNC1H1 | 13941 | NM_001376.5 | AD | |
EMX2 | 759 | NM_004098.4 | AD | |
FGF8 | 735 | NM_033163.5 | AD | |
FGFR1 | 2469 | NM_023110.3 | AD | |
FIG4 | 2724 | NM_014845.6 | AR | |
FKRP | 1488 | NM_024301.5 | AR | |
FKTN | 1386 | NM_001079802.2 | AR | |
FLNA | 7920 | NM_001456.4 | XL | |
GLI2 | 4761 | NM_005270.5 | AD | |
GPSM2 | 2055 | NM_013296.5 | AR | |
KATNB1 | 1968 | NM_005886.3 | AR | |
KIF2A | 2235 | NM_001098511.3 | AD | |
KIFBP | 1866 | NM_015634.4 | AR | |
LAMB1 | 5361 | NM_002291.3 | AR | |
LAMC3 | 4728 | NM_006059.4 | AR | |
LARGE1 | 2271 | NM_004737.7 | AR | |
MACF1 | 16293 | NM_012090.5 | AD | |
NDE1 | 1008 | NM_001143979.2 | AR | |
OCLN | 1569 | NM_002538.4 | AR | |
OSGEP | 1019 | NM_017807.4 | AR | |
PAFAH1B1 | 1233 | NM_000430.4 | AD | |
PEX1 | 3852 | NM_000466.3 | AR | |
PEX10 | 1041 | NM_153818.2 | AR | |
PEX11B | 780 | NM_003846.3 | AR | |
PEX12 | 1080 | NM_000286.3 | AR | |
PEX13 | 1212 | NM_002618.4 | AR | |
PEX14 | 1134 | NM_004565.3 | AR | |
PEX16 | 1011 | NM_004813.4 | AR | |
PEX19 | 900 | NM_002857.4 | AR | |
PEX2 | 918 | NM_000318.3 | AR | |
PEX26 | 918 | NM_017929.6 | AR | |
PEX3 | 1122 | NM_003630.3 | AR | |
PEX5 | 1920 | NM_001131025.2 | AR | |
PEX6 | 2943 | NM_000287.4 | AR | |
PEX7 | 972 | NM_000288.4 | AR | |
PHGDH | 1602 | NM_006623.4 | AR | |
POMGNT1 | 1983 | NM_017739.4 | AR | |
POMGNT2 | 1743 | NM_032806.6 | AR | |
POMT1 | 2244 | NM_007171.4 | AR | |
POMT2 | 2253 | NM_013382.7 | AR | |
PTCH1 | 4344 | NM_000264.5 | AD | |
PTEN | 1212 | NM_000314.8 | AD | |
RELN | 10383 | NM_005045.4 | AR, AD | |
RTTN | 6681 | NM_173630.4 | AR | |
RXYLT1 | 1355 | NM_014254.3 | AR | |
SHH | 1389 | NM_000193.4 | AD | |
SIX3 | 999 | NM_005413.4 | AD | |
SMO | 2364 | NM_005631.5 | AD | |
TGIF1 | 819 | NM_173208.3 | AD | |
TUBA1A | 1356 | NM_006009.4 | AD | |
TUBB | 1335 | NM_178014.4 | AD | |
TUBB2A | 1338 | NM_001069.3 | AD | |
TUBB3 | 1353 | NM_006086.4 | AD | |
ZIC2 | 1599 | NM_007129.5 | AD |
Informations about the disease
Synonyms
- Alias: Zerebrale Malformationen, kongenital
- Allelic: Amyotrophic lateral sclerosis 11 (FIG4)
- Allelic: Basal cell carcinoma, somatic (PTCH1)
- Allelic: Basal cell nevus syndrome (PTCH1)
- Allelic: CLAPO syndrome, somatic (PIK3CA)
- Allelic: CLOVE syndrome, somatic (PIK3CA)
- Allelic: Cardiac valvular dysplasia, XL (FLNA)
- Allelic: Cardiomyopathy, dilated, 1X (FKTN)
- Allelic: Charcot-Marie-Tooth disease, axonal, type 20 (DYNC1H1)
- Allelic: Charcot-Marie-Tooth disease, type 4J (FIG4)
- Allelic: Colorectal cancer, somatic (PIK3CA)
- Allelic: Congenital short bowel syndrome (FLNA)
- Allelic: Cowden syndrome 1 (PTEN)
- Allelic: Cowden syndrome 5 (PIK3CA)
- Allelic: Cowden syndrome 6 (AKT)
- Allelic: Curry-Jones syndrome, somatic mosaic (SMO)
- Allelic: Deafness, AD 20/26 (ACTG1)
- Allelic: Dystonia, juvenile-onset (ACTB)
- Allelic: Epilepsy, familial temporal lobe, 7 (RELN)
- Allelic: Fibrosis of extraocular muscles, congenital, 3A (TUBB3)
- Allelic: Glioma susceptibility 2 (PTEN)
- Allelic: Heimler syndrome 1 (PEX1)
- Allelic: Heimler syndrome 2 (PEX6)
- Allelic: Lhermitte-Duclos syndrome (PTEN)
- Allelic: Melnick-Needles syndrome (FLNA)
- Allelic: Meningioma (PTEN)
- Allelic: Microphthalmia with coloboma 5 (SHH)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 1 (POMT1)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 12 (POMK)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 3 (POMGNT1)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 4 (FKTN)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 5 (FKRP)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 7 (ISPD)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 8 (POMGNT2)
- Allelic: Muscular dystrophy-dystroglycanopathy, limb-girdle, type C, 9 (DAG1)
- Allelic: Retinitis pigmentosa 76 (POMGNT1)
- Allelic: Single median maxillary central incisor (SHH)
- Allelic: Spastic paraplegia 84, AR (PI4KA)
- Allelic: Spinal muscular atrophy, lower extremity-predominant 1, AD (DYNC1H1)
- Allelic: Symmetric circumferential skin creases, congenital, 1 (TUBB)
- Adams-Oliver syndrome 2 (DOCK6)
- Arthrogryposis [panelapp. MONDO:0008779] (KIF21A)
- Asparagine synthetase deficiency (ASNS)
- Baraitser-Winter syndrome 1 (ACTB)
- Baraitser-Winter syndrome 2 (ACTG1)
- Brain malformations +/- urinary tract defects (NFIA)
- CHILD syndrome (NSDHL)
- CK syndrome (NSDHL)
- Chudley-McCullough syndrome (GPSM2)
- Congenital heart defects, dysmorphic facial features, intellectual developmental disorder (CDK13)
- Congenital hyperinsulinism [panelapp] (FOXA2)
- Congenital hypopituitarism [panelapp] (FOXA2)
- Cortical dysplasia, complex, with other brain malformations 1 (TUBB3)
- Cortical dysplasia, complex, with other brain malformations 10 (APC2)
- Cortical dysplasia, complex, with other brain malformations 2 (KIF5C)
- Cortical dysplasia, complex, with other brain malformations 3 (KIF2A)
- Cortical dysplasia, complex, with other brain malformations 4 (TUBG1)
- Cortical dysplasia, complex, with other brain malformations 5 (TUBB2A)
- Cortical dysplasia, complex, with other brain malformations 6 (TUBB)
- Cortical dysplasia, complex, with other brain malformations 7 (TUBB2B)
- Cortical malformations, occipital (LAMC3)
- Culler-Jones syndrome (GLI2)
- Developmental + epileptic encephalopathy 1 (ARX)
- Ehlers-Danlos syndrome, vascular type (COL3A1)
- Encephalocraniocutaneous lipomatosis, somatic mosaic (FGFR1)
- FG syndrome 2 (FLNA)
- Fetal akinesia (KIF21A)
- Fibrosis of extraocular muscles, congenital, 1 (KIF21A)
- Fibrosis of extraocular muscles, congenital, 3B (KIF21A)
- Focal cortical dysplasia, type II, somatic (MTOR)
- Frontometaphyseal dysplasia 1 (FLNA)
- Galloway-Mowat syndrome 3 (OSGEP)
- Gastrointestinal defects and immunodeficiency syndrome 2 (PI4KA)
- Gaze palsy, familial horizontal, with progressive scoliosis, 1 (ROBO3)
- Gaze palsy, familial horizontal, with progressive scoliosis, 2 (DCC)
- Goldberg-Shprintzen megacolon syndrome (KIF1BP)
- Hartsfield syndrome (FGFR1)
- Heterotopia, periventricular, 1 (FLNA)
- Holoprosencephaly (DISP1, FGF8)
- Holoprosencephaly 11 (CDON)
- Holoprosencephaly 2 (SIX3)
- Holoprosencephaly 3 (SHH)
- Holoprosencephaly 4 (TGIF1)
- Holoprosencephaly 5 (ZIC2)
- Holoprosencephaly 7 (PTCH1)
- Holoprosencephaly 9 (GLI2)
- Hydranencephaly with abnormal genitalia (ARX)
- Hypogonadotropic hypogonadism 2 +/- anosmia (FGFR1)
- Hypogonadotropic hypogonadism 3 +/- anosmia (PROKR2)
- Hypogonadotropic hypogonadism 4 +/- anosmia (PROK2)
- Hypogonadotropic hypogonadism 6 +/- anosmia (FGF8)
- Hypopituitarism, craniofacial + endoderm-derived organ abnormalities [panelapp] (FOXA2)
- Intellectual developmental disorder, AR 34, with variant lissencephaly (CRADD)
- Intellectual developmental disorder, AR 74 (APC2)
- Joubert syndrome 3 (AHI1)
- Lissencephaly 1 (PAFAH1B1)
- Lissencephaly 2 [Norman-Roberts type] (RELN)
- Lissencephaly 3 (TUBA1A)
- Lissencephaly 4 [with microcephaly] (NDE1)
- Lissencephaly 5 (LAMB1)
- Lissencephaly 6, with microcephaly (KATNB1)
- Lissencephaly 9 with complex brainstem malformation (MACF1)
- Lissencephaly, XL 2 (ARX)
- Macrocephaly/autism syndrome (PTEN)
- Martsolf syndrome 2 (RAB3GAP1)
- Megalencephaly-capillary malformation-polymicrogyria syndrome, somatic (PIK3A)
- Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1 (PIK3R2)
- Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2 (AKT3)
- Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 (CCND2)
- Mental retardation, AD 13 (DYNC1H1)
- Mental retardation, XL 29 + others (ARX)
- Microcephaly 17, primary, AR (CIT)
- Microcephaly 2, primary, AR, with/-out cortical malformations (WDR62)
- Microcephaly 3, primary, AR (CDK5RAP2)
- Microcephaly 5, primary, AR (ASPM)
- Microcephaly 7, primary, AR (STIL)
- Microcephaly, epilepsy, and diabetes syndrome (IER3IP1)
- Microcephaly, progressive, seizures, cerebral + cerebellar atrophy (QARS1)
- Microcephaly, short stature + polymicrogyria with seizures (RTTN)
- Microhydranencephaly (NDE1)
- Mirror movements 1 and/or agenesis of the corpus callosum (DCC)
- Multinucleated neurons, anhydramnios, renal dyspl., cerebellar hypopl., hydranencephaly (CEP55)
- Multiple congenital anomalies-hypotonia-seizures syndrome 2 (PIGA)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 1 (POMT1)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 10 (TMEM5)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 11 (B3GALNT2)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 12 (POMK)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 13 (B4GAT1)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 3 (POMGNT1)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 4 (FKTN)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 5 (FKRP)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 6 (LARGE1)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 7 (ISPD)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 8 (POMGNT2)
- Muscular dystrophy-dystroglycanopathy, cong. with brain + eye anomalies, type A, 9 (DAG1)
- Muscular dystrophy-dystroglycanopathy, cong. with mental retardation, type B, 1 (POMT1)
- Muscular dystrophy-dystroglycanopathy, cong. with mental retardation, type B, 3 (POMGNT1)
- Muscular dystrophy-dystroglycanopathy, cong. with mental retardation, type B, 6 (LARGE1)
- Muscular dystrophy-dystroglycanopathy, cong. with/-out mental retardation, type B, 5 (FKRP)
- Muscular dystrophy-dystroglycanopathy, cong. without mental retardation, type B, 4 (FKTN)
- Neu-Laxova syndrome 1 (PHGDH)
- Neurodevelopmental disorder with epilepsy + hemochromatosis )PIGA)
- Neurodevelopmental disorder with microcephaly, cortical malformations, spasticity (TMX2)
- Okur-Chung neurodevelopmental syndrome (CSNK2A1)
- Orofaciodigital syndrome XIV (C2CD3)
- Pallister-Hall-like syndrome (SMO)
- Partington syndrome (ARX)
- Periventricular heterotopia with microcephaly (ARFGEF2)
- Periventricular nodular heterotopia 7 (NEDD4L)
- Peroxisome biogenesis disorder 10A [Zellweger] (PEX3)
- Peroxisome biogenesis disorder 10B (PEX3)
- Peroxisome biogenesis disorder 11A [Zellweger] (PEX13)
- Peroxisome biogenesis disorder 11B (PEX13)
- Peroxisome biogenesis disorder 12A [Zellweger] (PEX19)
- Peroxisome biogenesis disorder 13A [Zellweger] (PEX14)
- Peroxisome biogenesis disorder 14B (PEX11B)
- Peroxisome biogenesis disorder 1A [Zellweger] (PEX1)
- Peroxisome biogenesis disorder 1B [NALD/IRD] (PEX1)
- Peroxisome biogenesis disorder 2A [Zellweger] (PEX5)
- Peroxisome biogenesis disorder 2B (PEX5)
- Peroxisome biogenesis disorder 3A [Zellweger] (PEX12)
- Peroxisome biogenesis disorder 3B (PEX12)
- Peroxisome biogenesis disorder 4A [Zellweger] (PEX6)
- Peroxisome biogenesis disorder 4B (PEX6)
- Peroxisome biogenesis disorder 5A [Zellweger] (PEX2)
- Peroxisome biogenesis disorder 5B (PEX2)
- Peroxisome biogenesis disorder 6A [Zellweger] (PEX10)
- Peroxisome biogenesis disorder 6B (PEX10)
- Peroxisome biogenesis disorder 7A [Zellweger] (PEX26)
- Peroxisome biogenesis disorder 7B (PEX26)
- Peroxisome biogenesis disorder 8A [Zellweger] (PEX16)
- Peroxisome biogenesis disorder 8B (PEX16)
- Peroxisome biogenesis disorder 9B (PEX7)
- Phosphoglycerate dehydrogenase deficiency (PHGDH)
- Polymicrogyria +/- vascular-type EDS (COL3A1)
- Polymicrogyria, bilateral frontoparietal (ADGRG1)
- Polymicrogyria, bilateral perisylvian (ADGRG1)
- Polymicrogyria, bilateral temporooccipital (FIG4)
- Polymicrogyria, perisylvian, with cerebellar hypoplasia + arthrogryposis (PI4KA)
- Proteus syndrome, somatic (AKT)
- Proud syndrome (ARX)
- Pseudo-TORCH syndrome 1 (OCLN)
- Pseudo-TORCH syndrome 2 (USP18)
- Rhizomelic chondrodysplasia punctata, type 1 (PEX7)
- Rhizomelic chondrodysplasia punctata, type 5 (PEX5)
- Schizencephaly (EMX2, SHH, SIX3)
- Severe combined immunodeficiency, microcephaly, growth retardation, radiation sensitive (NHEJ1)
- Smith-Kingsmore syndrome (MTOR)
- Smith-Lemli-Opitz syndrome (DHCR7)
- Subcortical laminal heterotopia, XL (DCX)
- Subcortical laminar heterotopia (PAFAH1B1)
- Vici syndrome (EPG5)
- Warburg micro syndrome 1 (RAB3GAP1)
- Yunis-Varon syndrome (FIG4)
Heredity, heredity patterns etc.
- AD
- AR
- XL
- n.k.
OMIM-Ps
- Multiple OMIM-Ps
ICD10 Code
Bioinformatics and clinical interpretation
No text defined