IllnessDiaphragmatic hernias, congenital, differential diagnosis
Summary
Short information
Comprehensive differential diagnostic panel for Diaphragmatic hernias, congenital, comprising 6 core candidate genes as well as altogether 75 curated genes according to the clinical signs
ID
ZP3999
Number of genes
58
Accredited laboratory test
Examined sequence length
12,4 kb (Core-/Core-canditate-Genes)
218,7 kb (Extended panel: incl. additional genes)
218,7 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
- EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications
NGS +
[Sanger]
Gene panel
Selected genes
Name | Exon Length (bp) | OMIM-G | Referenz-Seq. | Heredity |
---|---|---|---|---|
GATA4 | 1329 | NM_002052.5 | AD | |
GATA6 | 1788 | NM_005257.6 | AD | |
MYOD1 | 963 | NM_002478.5 | AR | |
MYRF | 3506 | NM_001127392.3 | AD | |
RARB | 1347 | NM_000965.5 | AD, AR | |
ZFPM2 | 3456 | NM_012082.4 | AD | |
ARID1A | 6858 | NM_006015.6 | AD | |
ARID1B | 6750 | NM_001374820.1 | AD | |
BRCA2 | 10257 | NM_000059.4 | AD, AR | |
CDKN1C | 951 | NM_000076.2 | AD | |
CHD7 | 8994 | NM_017780.4 | AD | |
COL3A1 | 4401 | NM_000090.4 | AD, AR | |
COX7B | 243 | NM_001866.3 | XL | |
DLL3 | 1857 | NM_016941.4 | AR | |
EFNB1 | 1041 | NM_004429.5 | XL | |
FBN1 | 8616 | NM_000138.5 | AD | |
FGFR2 | 2466 | NM_000141.5 | AD | |
FRAS1 | 12039 | NM_025074.7 | AR | |
FREM1 | 6540 | NM_144966.7 | n.k. | |
FREM2 | 9510 | NM_207361.6 | AR | |
GLI3 | 4743 | NM_000168.6 | AD | |
GPC3 | 1743 | NM_004484.4 | XL | |
HCCS | 807 | NM_005333.5 | XL | |
HDAC8 | 1134 | NM_018486.3 | XL | |
HES7 | 678 | NM_032580.4 | AR | |
KDM6A | 4206 | NM_021140.4 | XL | |
KIF7 | 4032 | NM_198525.3 | AR | |
KMT2D | 16614 | NM_003482.4 | AD | |
LFNG | 1140 | NM_001040167.2 | AR | |
LRP2 | 13968 | NM_004525.3 | AR | |
LTBP4 | 4763 | NM_003573.2 | AR | |
MESP2 | 1194 | NM_001039958.2 | AR | |
MID1 | 2004 | NM_000381.4 | XL | |
MTM1 | 1812 | NM_000252.3 | XL | |
MYH10 | 6097 | NM_001256012.3 | AD | |
NDST1 | 2649 | NM_001543.5 | AR | |
NDUFB11 | 462 | NM_001135998.3 | XL | |
NIPBL | 8415 | NM_133433.4 | AD | |
NR2F2 | 1245 | NM_021005.4 | AD | |
OCRL | 2706 | NM_000276.4 | XL | |
PBX1 | 1293 | NM_002585.4 | AD | |
PIGN | 2796 | NM_176787.5 | AR | |
POGZ | 4233 | NM_015100.4 | AD | |
PORCN | 1386 | NM_203475.3 | XL | |
RAD21 | 1896 | NM_006265.3 | AD, AR | |
RLIM | 1875 | NM_016120.4 | XL | |
ROBO1 | 4656 | NM_001145845.2 | AD, AR | |
SLC2A10 | 1626 | NM_030777.4 | AR | |
SLIT3 | 4593 | NM_001271946.2 | n.k. | |
SMARCA4 | 5040 | NM_001128849.3 | AD | |
SMARCB1 | 1158 | NM_003073.5 | AD | |
SMARCE1 | 1236 | NM_003079.5 | AD | |
SMC1A | 3702 | NM_006306.4 | XL | |
SMC3 | 3654 | NM_005445.4 | AD | |
SOX11 | 1326 | NM_003108.4 | AD | |
STRA6 | 2004 | NM_001142617.2 | AR | |
TBX6 | 1311 | NM_004608.4 | AD, AR | |
WT1 | 1569 | NM_024426.6 | n.k. |
Informations about the disease
Clinical Comment
Defect during embryogenesis which can be non-syndromic (70%) or syndromic (30%) with posterolateral defect of diaphragm allowing passage of abdominal viscera into thorax, leading to respiratory insufficiency + persistent pulmonary hypertension
Synonyms
- Allelic: Breast-ovarian cancer, familial, 2 (BRCA2)
- Allelic: Glioblastoma 3 (BRCA2)
- Allelic: Medulloblastoma (BRCA2)
- Allelic: Pancreatic cancer 2 (BRCA2)
- Allelic: Prostate cancer (BRCA2)
- Allelic; Breast cancer, male, susceptibility to (BRCA2)
- Apert syndrome (FGFR2)
- Arterial tortuosity syndrome (SL2A10)
- Beckwith-Wiedemann syndrome (imprinting defect at 11p15.5; CDKN1C)
- CEBALID syndrome: Craniofacial defect, dysm. Ears, Brain Anomalies, expr. Language delay (MN1)
- CHARGE syndrome (CHD7)
- Cardiac-urogenital syndrome (MYRF)
- Coffin-Siris syndrome (ARID1A, ARID1B, SMARCA4, SMARCB1, SMARCE1, SOX11)
- Coffin-Siris syndrome 7 (DPF2)
- Congenital diaphragmatic hernia + heart defects (GATA4)
- Congenital disorder of glycosylation, type Ig (ALG12)
- Congenital heart defects + skeletal malformations syndrome (ABL1)
- Congenital heart defects, multiple types, 4 (NR2F2)
- Cornelia de Lange syndrome (NIPBL, RAD21, SMC3, HDAC8, SMC1A)
- Craniofrontonasal syndrome (EFNB1)
- Cutis laxa, AR, type IB (EFEMP2)
- Denys-Drash syndrome (WT1)
- Diaphragmatic hernia type 3 (ZFPM2)
- Diets-Jongmans syndrome (KDM3B)
- Donnai-Barrow syndrome (LRP2)
- Escobar syndrome (CHRNG)
- Facial clefting, oblique, 1 (SPECC1L)
- Fanconi anemia, complementation group D1 (BRCA2)
- Focal dermal hypoplasia (PORCN)
- Fraser syndrome (FRAS1, FREM2)
- Heart defects, congenital & other congenital anomalies (GATA6)
- Holoprosencephaly 13, XL (STAG2)
- Kabuki syndrome (KMT2D, KDM6A)
- LTBP4-related cutis laxa (LTBP4)
- Marfan syndrome (FBN1)
- Meacham syndrome (WT1)
- Meningioma (MN1)
- Menke-Hennekam syndrome 2 (EP300)
- Microphthalmia with linear skin defects syndrome (COX7B, HCCS, NDUFB11)
- Microphthalmia, syndromic (RARB, STRA6)
- Mullegama-Klein-Martinez syndrome (STAG2)
- Multiple congenital abnormalities [panelapp] (FOXP4)
- Multiple congenital anomalies-hypotonia-seizures syndrome (PIGN)
- Multiple joint dislocations, short stature, craniofacial dysm. +/- congenital heart defects (B3GAT3)
- Multiple pterygium syndrome, lethal type (CHRNG)
- Neurodevelopmental disorder [panelapp] (FOXP4)
- Rubinstein-Taybi syndrome 2 (EP300)
- Simpson-Golabi-Behmel syndrome type 1 (GPC3)
- Sotos syndrome (NSD1)
- Spondylocostal dysostosis (DLL3, HES7, LFNG, MESP2, RIPPLY2, TBX6)
- Teebi hypertelorism syndrome 1 (SPECC1L)
- Tonne-Kalscheuer syndrome (RLIM)
- Vascular Ehlers-Danlos syndrome (COL3A1)
- White-Sutton syndrome (POGZ)
- Wilms tumor (BRCA2)
- Witteveen-Kolk syndrome (SIN3A)
Heredity, heredity patterns etc.
- AD
- AR
- XL
- n.k.
OMIM-Ps
- Multiple OMIM-Ps
ICD10 Code
Bioinformatics and clinical interpretation
No text defined