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IllnessDystonia, childhood; differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Dystonia, childhood onset comprising 14 guideline-curated and altogether 55 curated genes according to the clinical signs

ID
DP0191
Number of genes
55 Accredited laboratory test
Examined sequence length
32,3 kb (Core-/Core-canditate-Genes)
127,5 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
ANO32946NM_031418.4AD
ATP1A33042NM_152296.5AD
GCH1753NM_000161.3AD, AR
GNAL1146NM_001142339.3AD
KCTD171645NM_024681.3AD
KMT2B8232NM_014727.3AD
PNKD429NM_015488.5AD
PRKN1398NM_004562.3AR
PRKRA942NM_003690.5AR
PRRT21023NM_145239.3AD
SGCE1314NM_003919.3AD
SLC2A11479
  • No OMIM-Gs linked
NM_006516.4AD, AR
SPR786NM_003124.5AR
TH1587NM_199292.3AR
THAP1642NM_018105.3AD
TOR1A999NM_000113.3AD, AR
TUBB4A1335NM_006087.4AD
VPS162544NM_022575.4AD
ADAR2796NM_001111.5AR, AD
ADCY53786NM_183357.3AD
APTX1029NM_175073.3AR
ATM9171NM_000051.4AR
ATP13A23543NM_022089.4AR
ATP7B4398NM_000053.4AR
ATXN23462NM_002973.4AD
ATXN31086NM_004993.6AD
BCAP31741NM_001139441.1XLR
C19orf12459NM_001031726.3AR, AD
COASY1695NM_025233.7AR
COL6A39534NM_004369.4AR
DCAF171563NM_025000.4AR
DDC1443NM_000790.4AR
DLAT1944NM_001931.5AR
FA2H1119NM_024306.5AR
FBXO71332NM_001033024.2AR
FTL528NM_000146.4AD
GNAO11065NM_020988.3AD
HPCA582NM_002143.3AR
HTRA21377NM_013247.5AR
MECR1392NM_016011.5AR
NKX6-2837NM_177400.3AR
PANK21713NM_153638.4AR
PINK11746NM_032409.3AR
PLA2G62421NM_003560.4AR
PNPT12352NM_033109.5AR
SERAC11965NM_032861.4AR
SLC30A101458NM_018713.3AR
SLC6A31863NM_001044.5AR
SYNJ14839NM_003895.3AR
TAF15682NM_004606.5XL
VAC143418NM_018052.5AR
VPS13A9408NM_033305.3AR
WDR451086NM_007075.4XL
WDR731137NM_032856.5AR
YY11245NM_003403.5AD

Informations about the disease

Clinical Comment

Dystonias are associated with involuntary, repetitive, sustained muscle contractions/postures, typically beginning in a single limb, followed by progressive involvement of other limbs and the trunk. Early etiologic diagnosis is of great importance in childhood dystonia, as some of the possible underlying conditions are treatable. Numerous genetic (and nongenetic) causes are known. The genetic forms of dystonia, including inborn errors of metabolism, can be divided into two groups. The first group consists of the monogenic forms of dystonia with assigned genetic loci identified as DYT1-29, which have been termed primary dystonias and dystonia plus syndromes. These disorders are characterized by isolated dystonia or dystonia in combination with parkinsonism or myoclonus. The second group consists of genetic disorders in which dystonia is an important feature among several other neurological and systemic features. Important associated features in children are: ataxia, epilepsy, mental retardation, spasticity, hypotonia, abnormal eye movements, neuropathy, deafness, ophthalmologic signs, hepatosplenomegaly, psychiatric and dysmorphic features. These features are critical for accurate phenotyping and are prerequisites for correct interpretations of NGS results. The DNA diagnostic yield depends critically on the prior clinical case workup and the largest possible gene panel coverage, with the latter defining mutations in up to 30%. A negative molecular genetic result represents only the exclusion of the molecular genetically defined diagnoses. The yield appears higher in complex dystonia than in isolated, in particular in patients with intellectual deficits.

References: https://www.ncbi.nlm.nih.gov/books/NBK1155/

https://jnnp.bmj.com/content/86/7/774

https://pubmed.ncbi.nlm.nih.gov/32334381/

 

Synonyms
  • Aicardi-Goutieres syndrome 6 (ADAR)
  • Alias: Early-onset (generalized) torsion dystonia
  • Alias: Early-onset isolated dystonia
  • Alias: Early-onset primary dystonia
  • Alias: Idiopathic torsion dystonia
  • Alias: Oppenheim dystonia
  • Allelic: Adenocarcinoma of lung, somatic (PRKN)
  • Allelic: Amyotrophic lateral sclerosis, susceptibility to, 13 (ATXN2)
  • Allelic: Breast cancer, susceptibility to (ATM)
  • Allelic: Dyschromatosis symmetrica hereditaria (ADAR)
  • Allelic: Hemosiderosis, systemic, due to aceruloplasminemia (CP)
  • Allelic: Hyperferritinemia-cataract syndrome (FTL)
  • Allelic: Hypoceruloplasminemia, hereditary (CP)
  • Allelic: L-ferritin deficiency, AD + AR (FTL)
  • Allelic: Lymphoma, B-cell non-Hodgkin, somatic (ATM)
  • Allelic: Lymphoma, mantle cell, somatic (ATM)
  • Allelic: Migraine, familial basilar (ATP1A2)
  • Allelic: Migraine, familial hemiplegic, 2 (ATP1A2)
  • Allelic: Ovarian cancer, somatic (PRKN)
  • Allelic: Parkinson disease 13 (HTRA2)
  • Allelic: Parkinson disease, late-onset, susceptibility to (ATXN2)
  • Allelic: T-cell prolymphocytic leukemia, somatic (ATM)
  • 3-methylglutaconic aciduria, type VIII (HTRA2)
  • Allelic: Seizures, benign neonatal, 1 (KCNQ2)
  • Alternating hemiplegia of childhood (ATP1A3)
  • Alternating hemiplegia of childhood 1 (ATP1A2)
  • Aromatic L-amino acid decarboxylase deficiency (DDC)
  • Arthrogryposis multiplex congenita 5 (TOR1)
  • Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia (APTX)
  • Ataxia-telangiectasia (ATM)
  • Basal ganglia calcification, idiopathic, 1 (SLC20A2)
  • Basal ganglia calcification, idiopathic, 1 (SLC39A14)
  • CAPOS syndrome (ATP1A3)
  • Cerebellar ataxia (CP)
  • Choreoacanthocytosis (VPS13A)
  • Deafness, dystonia + cerebral hypomyelination (BCAP31)
  • Developmental + epileptic encephalopathy 17 (GNAO1)
  • Developmental + epileptic encephalopathy 53 (SYNJ1)
  • Developmental and epileptic encephalopathy 7 (KCNQ2)
  • Developmental and epileptic encephalopathy 98 (ATP1A2)
  • Dyskinesia, familial, with facial myokymia (ADCY5)
  • Dystonia 11, myoclonic (SGCE)
  • Dystonia 12 (ATP1A3)
  • Dystonia 25 (GNAL)
  • Dystonia 26, myoclonic (KCTD17)
  • Dystonia 28, childhood-onset (KMT2B)
  • Dystonia 30 (VPS16)
  • Dystonia 4, torsion, AD (TUBB4A)
  • Dystonia 6, torsion (THAP1)
  • Dystonia musculorum deformans 1
  • Dystonia, DOPA-responsive, due to sepiapterin reductase deficiency (SPR)
  • Dystonia, DOPA-responsive, with or without hyperphenylalaninemia (GCH1)
  • Dystonia, childhood-onset, with optic atrophy + basal ganglia abnormalities (MECR)
  • Dystonia-1, modifier of (TOR1)
  • Dystonia-1, torsion (TOR1)
  • Dystonia-Parkinsonism, XL (retroposon insertion in TAF1)
  • Epilepsy, progressive myoclonic 1A [Unverricht + Lundborg] (CSTB)
  • Fetal akinesia, respiratory insuff., microcephaly, polymicrogyria, dysmorphic face (ATP1A2)
  • Frontotemporal dementia and/or amytrophic lateral sclerosis 7 (CHMP2B)
  • Gabriele-de Vries syndrome (YY1)
  • Galloway-Mowat syndrome 1 (WDR73)
  • Glutaricaciduria, type I (GCDH)
  • Huntington disease-like 2 (JPH3)
  • Hypermanganesemia with dystonia 1 (SLC30A10)
  • Hyperphenylalaninemia, BH4-deficient, B (GCH1)
  • Hyperuricemia, HRPT-related (HPRT1)
  • ID, autism, abnormal behavior, dystonia, ataxia, chorea, myoclonus (CAMK4)
  • Kufor-Rakeb syndrome (ATP13A2)
  • Lesch-Nyhan syndrome (HPRT1)
  • Leukodystrophy, hypomyelinating, 6 (TUBB4A)
  • Machado-Joseph disease (ATXN3_CAG)
  • McLeod syndrome with/-out chronic granulomatous disease (XK)
  • Mental retardation, XL, syndromic 3 (TAF1)
  • Mitochondrial DNA depletion syndrome 5, encephalomyopathic +/- methylmalonic aciduria (SUCLA2)
  • Myokymia (KCNQ2)
  • Neurodegeneration with brain iron accumulation 3 (FTL)
  • Neurodegeneration with brain iron accumulation 4 (C19orf12)
  • Neurodegeneration with brain iron accumulation 5 (WDR45)
  • Neurodegeneration with brain iron accumulation 6 (COASY)
  • Neurodevelopmental disorder with dystonia [panelapp] (IMPDH2)
  • Neurodevelopmental disorder with involuntary movements (GNAO1)
  • Neurodevelopmental disorder, spasticity, cataracts, cerebellar hypoplasia (MED27)
  • Parkinson disease 15, AR (FBXO7)
  • Parkinson disease 20, early-onset (SYNJ1)
  • Parkinson disease, juvenile, type 2 (PRKN)
  • Paroxysmal nonkinesigenic dyskinesia 1 (PNKD)
  • Pettigrew syndrome (AP1S2)
  • Pontocerebellar hypoplasia, type 12 (COASY)
  • Pyruvate dehydrogenase E2 deficiency (DLAT)
  • Spastic ataxia 8, AR, with hypomyelinating leukodystrophy (NKX6-2)
  • Spastic paraplegia 35, AR (FA2H)
  • Spastic paraplegia 43, AR (C19orf12)
  • Spastic paraplegia 78, AR (ATP13A2)
  • Spinocerebellar ataxia 2 (ATXN2_CAG)
  • Spinocerebellar ataxia, AR 29 (VPS41)
  • Striatonigral degeneration, childhood-onset (VAC14)
  • Thiamine metabolism dysfunction syndrome 2, biotin-/thiamine-resp. encephalopathy type 2 (SLC19A3)
  • Wilson disease (ATP7B)
  • Woodhouse-Sakati syndrome (DCAF17)
Heredity, heredity patterns etc.
  • AD
  • AR
  • XL
  • XLR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

Test-Stärken

  • DAkkS-akkreditiertes Labor
  • EU-Richtlinie für IVD in Umsetzung
  • Qualitäts-kontrolliert arbeitendes Personal
  • Leistungsstarke Sequenzierungstechnologien, fortschrittliche Target-Anreicherungsmethoden und Präzisions-Bioinformatik-Pipelines sorgen für überragende analytische Leistung
  • Sorgfältige Kuratierung klinisch relevanter und wissenschaftlich begründeter Gen-Panels
  • eine Vielzahl nicht Protein-kodierender Varianten, die in unseren klinischen NGS-Tests mit erfasst werden
  • unser strenges Variantenklassifizierungsschema nach ACMG-Kriterien
  • unser systematischer klinischer Interpretations-Workflow mit proprietärer Software ermöglicht die genaue und nachvollziehbare Verarbeitung von NGS-Daten
  • unsere umfassenden klinischen Aussagen

Testeinschränkungen

  • Gene mit eingeschränkter Abdeckung werden gekennzeichnet
  • Gene mit kompletten oder partiellen Duplikationen werden gekennzeichnet
  • es wird angenommen, dass ein Gen suboptimal abgedeckt ist, wenn >90% der Nukleotide des Gens bei einem Mapping-Qualitätsfaktor von >20 (MQ>20) nicht abgedeckt sind
  • die Sensitivität der Diagnostik zur Erkennung von Varianten mit genannten Testeinschränkungen ist möglicherweise begrenzt bei:
  • Gen-Konversionen
  • komplexe Inversionen
  • Balancierte Translokationen
  • Mitochondriale Varianten
  • Repeat-Expansionen, sofern nicht anders dokumentiert
  • nicht kodierende Varianten, die Krankheiten verursachen, die von diesem Panel nicht mit abgedeckt werden
  • niedriger Mosaik-Status
  • Repeat-Blöcke von Mononukleotiden
  • Indels >50bp (Insertionen-Deletionen)
  • Deletionen oder Duplikationen einzelner Exons
  • Varianten innerhalb von Pseudogenen
  • die analytische Sensitivität kann geringer ausfallen werden, wenn die DNA nicht von amedes genetics extrahiert wurde

Laboratory requirement

  • Die in grün gezeigten Gene sind kuratiert und werden als Gen-Panel untersucht. Eine Erweiterung des Panels (blau gezeigte Gene, jeweils ebenfalls kuratiert) kann auf Anfrage erfolgen. Sofern unter "Erweitertes Panel" ein Minuszeichen angezeigt wird, sind nur Core-/Basis-Gene verfügbar.

  • Für die Anforderung einer genetischen Untersuchung senden Sie uns bitte die Krankheits-ID auf einem Überweisungsschein. Bitte die Material-Angabe beachten.

  • Für privat versicherte Patienten empfehlen wir einen Antrag auf Kostenübernahme bei der Krankenversicherung.

  • Die Untersuchung wird auch für Selbstzahler angeboten.