IllnessGastrointestinal tumors, monogeneic; differential diagnosis
Summary
Short information
Comprehensive differential diagnostic panel for monogenic gastrointestinal tumors comprising 6 core candidate genes and altogether 22 curated genes according to the clinical signs
ID
GP4488
Number of genes
20
Accredited laboratory test
Examined sequence length
22,0 kb (Core-/Core-canditate-Genes)
72,5 kb (Extended panel: incl. additional genes)
72,5 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
- EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications
NGS +
[Sanger]
Gene panel
Selected genes
Name | Exon Length (bp) | OMIM-G | Referenz-Seq. | Heredity |
---|---|---|---|---|
APC | 8532 | NM_000038.6 | AD | |
MLH1 | 2271 | NM_000249.4 | AD, AR | |
MSH2 | 2805 | NM_000251.3 | AD, Sus | |
MSH6 | 4083 | NM_000179.3 | AD, Sus | |
MUTYH | 1650 | NM_001128425.2 | AR, Sus | |
PMS2 | 2589 | NM_000535.7 | AD, Sus, AR | |
AKT1 | 1443 | NM_005163.2 | AD | |
ATM | 9171 | NM_000051.4 | AR | |
BMPR1A | 1599 | NM_004329.3 | AD | |
BRCA1 | 5592 | NM_007294.4 | n.k. | |
BRCA2 | 10257 | NM_000059.4 | n.k. | |
CDH1 | 2649 | NM_004360.5 | n.k. | |
EPCAM | 945 | NM_002354.3 | AD | |
NTHL1 | 915 | NM_002528.7 | AR | |
PALB2 | 3561 | NM_024675.4 | AD | |
POLD1 | 3324 | NM_002691.4 | AD | |
POLE | 6861 | NM_006231.4 | AD | |
PTEN | 1212 | NM_000314.8 | AD | |
SMAD4 | 1659 | NM_005359.6 | AD | |
STK11 | 1302 | NM_000455.5 | AD |
Informations about the disease
Synonyms
- Alias: GI tract tumours
- Allelic: Adenoma, periampullary, somatic (APC)
- Allelic: Blepharocheilodontic syndrome 1 (CDH1)
- Allelic: Brain tumor-polyposis syndrome 2 (APC)
- Allelic: Breast cancer, lobular (CDH1)
- Allelic: Desmoid disease, hereditary (APC)
- Allelic: Diarrhea 5, with tufting enteropathy, congenital (EPCAM)
- Allelic: Endometrial cancer, familial (MSH6)
- Allelic: Endometrial carcinoma, somatic (CDH1)
- Allelic: FILS syndrome (POLE)
- Allelic: Gastric cancer, hereditary diffuse, with/-out cleft lip and/or palate (CDH1)
- Allelic: Gastric cancer, somatic (APC)
- Allelic: Gastric cancer, somatic (MUTYH)
- Allelic: Glioma susceptibility 2 (PTEN)
- Allelic: Hepatoblastoma, somatic (APC)
- Allelic: IMAGE-I syndrome (POLE)
- Allelic: Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome (SMAD4)
- Allelic: Macrocephaly/autism syndrome (PTEN)
- Allelic: Mandibular hypoplasia, deafness, progeroid features, lipodystrophy syndrome (POLD1)
- Allelic: Melanoma, malignant, somatic (STK11)
- Allelic: Meningiom (PTEN)
- Allelic: Mismatch repair cancer syndrome (MLH1, MSH2, MSH6, PMS2)
- Allelic: Muir-Torre syndrome (MLH1, MSH2)
- Allelic: Myhre syndrome (SMAD4)
- Allelic: Ovarian cancer, somatic (CDH1)
- Allelic: Pancreatic cancer, somatic (SMAD4)
- Allelic: Pancreatic cancer, somatic (STK11)
- Allelic: Prostate cancer, somatic (PTEN)
- Allelic: Prostate cancer, susceptibility to (CDH1)
- Allelic: Testicular tumor, somatic (STK11)
- Adenomas, multiple colorectal (MUTYH)
- Adenomatous polyposis coli (APC)
- Allelic: Breast cancer, susceptibility to (ATM)
- Allelic: Breast cancer, susceptibility to (PALB2)
- Allelic: Breast-ovarian cancer, familial, 1 (BRCA1)
- Allelic: Breast-ovarian cancer, familial, 2 (BRCA2)
- Allelic: Fanconi anemia, complementation group D1 (BRCA2)
- Allelic: Fanconi anemia, complementation group N (PALB2)
- Allelic: Fanconi anemia, complementation group S (BRCA1)
- Allelic: Uveal melanoma, susceptibility to, 1 (MBD4)
- Allelic: Wilms tumor (BRCA2)
- Ataxia-telangiectasia (ATM)
- Colorectal cancer, hereditary nonpolyposis, type 1 (MSH2)
- Colorectal cancer, hereditary nonpolyposis, type 2 (MLH1)
- Colorectal cancer, hereditary nonpolyposis, type 4 (PMS2)
- Colorectal cancer, hereditary nonpolyposis, type 5 (MSH6)
- Colorectal cancer, hereditary nonpolyposis, type 8 (EPCAM)
- Colorectal cancer, somatic (APC)
- Colorectal cancer, susceptibility to, 10 (POLD1)
- Colorectal cancer, susceptibility to, 12 (POLE)
- Cowden syndrome 1 (PTEN)
- Familial adenomatous polyposis 1 (APC)
- Familial adenomatous polyposis 2 (MUTYH)
- Familial adenomatous polyposis 3 (NTHL1)
- Gardner syndrome (APC)
- Juvenile polyposis syndrome, infantile form (BMPR1A)
- Lhermitte-Duclos syndrome (PTEN)
- Melanoma-pancreatic cancer syndrome (CDKN2A)
- Pancreatic cancer 2 (BRCA2)
- Pancreatic cancer, susceptibility to, 3 (PALB2)
- Pancreatic cancer, susceptibility to, 4 (BRCA1)
- Peutz-Jeghers syndrome (STK11)
- Polyposis syndrome, hereditary mixed, 2 (BMPR1A)
- Polyposis, juvenile intestinal (BMPR1A)
- Polyposis, juvenile intestinal (SMAD4)
- Tumor predisposition syndrome 2 (MBD4)
Heredity, heredity patterns etc.
- AD
- AR
- Sus
- n.k.
OMIM-Ps
- Multiple OMIM-Ps
ICD10 Code
Bioinformatics and clinical interpretation
No text defined