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Know how in the analysis of genetic material.
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IllnessPolyps, hamartomatous [gastrointestinal], differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Polyps, hamartomatous [gastrointestinal], differential diagnosis, comprising 4 guideline-curated or altogether 12 curated genes according to the clinical signs

ID
HP0008
Number of genes
11 Accredited laboratory test
Examined sequence length
5,8 kb (Core-/Core-canditate-Genes)
27,2 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
BMPR1A1599NM_004329.3AD
PTEN1212NM_000314.8AD
SMAD41659NM_005359.6AD
STK111302NM_000455.5AD
AKT11443NM_005163.2AD
FLCN1740NM_144997.7AD
GREM1555NM_013372.7AD
NF18457NM_001042492.3AD
PTCH14344NM_000264.5AD
RET3345NM_020975.6AD
SUFU1455NM_016169.4AD, AR

Informations about the disease

Clinical Comment

Hamartomatous polyps of the digestive tract are rare entities. They may be solitary (solitary Peutz-Jeghers polyp or solitary juvenile polyp) or multiple, the latter often associated with a genetic predisposition, such as Peutz-Jeghers syndrome, juvenile polyposis, Cowden and other PTEN hamartoma tumor syndromes (or of unknown origin such as Cronkhite-Canada syndrome). Hamartomatous polyps have also been described in patients with neurofibromatosis 1, multiple endocrine neoplasia 2B, Gorlin or Birt-Hogg-Dubé syndrome. The diagnosis is based on clinical and dermatological findings as well as endoscopy or histology. Main problems with hamartomatous polyps are intestinal complications (hemorrhage, obstruction, infarction, intussusception) and the risk of malignant degeneration, especially in the genetic forms, which are usually inherited in an autosomal dominant manner. The DNA diagnostic yields vary considerably between 30-80%. A negative molecular genetic result does not constitute exclusion of the clinical diagnosis.

References: https://pubmed.ncbi.nlm.nih.gov/31107726/

https://pubmed.ncbi.nlm.nih.gov/25645574/

 

Synonyms
  • Allelic: Basal cell carcinoma, somatic (PTCH1, PITCH2)
  • Allelic: Basal cell nevus syndrome [Gorlin syndrome] (PTCH1, PTCH2, SUFU)
  • Allelic: Breast cancer, somatic (AKT1)
  • Allelic: Central hypoventilation syndrome, congenital (RET)
  • Allelic: Glioma susceptibility 2 (PTEN)
  • Allelic: Hirschsprung disease, protection against (RET)
  • Allelic: Hirschsprung disease, susceptibility to, 1 (RET)
  • Allelic: Holoprosencephaly 7 (PTCH1)
  • Allelic: Joubert syndrome 32 (SUFU)
  • Allelic: Leukemia, juvenile myelomonocytic (NF1)
  • Allelic: Lhermitte-Duclos syndrome (PTEN)
  • Allelic: Macrocephaly/autism syndrome (PTEN)
  • Allelic: Medullary thyroid carcinoma (RET)
  • Allelic: Medulloblastoma, desmoplastic (SUFU)
  • Allelic: Medulloblastoma, somatic (PTCH2)
  • Allelic: Melanoma, malignant, somatic (STK11)
  • Allelic: Meningioma (PTEN)
  • Allelic: Meningioma, familial, susceptibility to (SUFU)
  • Allelic: Multiple endocrine neoplasia IIA + IIB (RET)
  • Allelic: Myhre syndrome (SMAD4)
  • Allelic: Neurofibromatosis, familial spinal (NF1)
  • Allelic: Neurofibromatosis-Noonan syndrome (NF1)
  • Allelic: Ovarian cancer, somatic (AKT1)
  • Allelic: Pancreatic cancer, somatic (SMAD4, STK11)
  • Allelic: Pheochromocytoma (RET)
  • Allelic: Pneumothorax, primary spontaneous (FLCN)
  • Allelic: Prostate cancer, somatic (PTEN)
  • Allelic: Proteus syndrome, somatic (AKT1)
  • Allelic: Renal carcinoma, chromophobe, somatic (FLCN)
  • Allelic: Testicular tumor, somatic (STK11)
  • Allelic: Watson syndrome (NF1)
  • Birt-Hogg-Dubé syndrome (FLCN)
  • Colorectal cancer, somatic (AKT1, FLCN)
  • Cowden syndrome 1 [Bannayan-Riley-Ruvalcaba syndrome] (PTEN)
  • Cowden syndrome 6 (AKT1)
  • Hereditary mixed polyposis syndrome (BMPR1A)
  • Juvenile polyposis syndrome, infantile form (BMPR1A)
  • Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome (SMAD4)
  • Multiple endocrine neoplasia of type 2B (RET)
  • Neurofibromatosis, type 1 (NF1)
  • PTEN-hamartoma tumour syndrome (PTEN)
  • PTEN-related Proteus syndrome + Proteus-like-syndrome (PTEN)
  • Peutz-Jeghers syndrome [Hamartomatous intestinal polyposis] (STK11)
  • Polyposis syndrome, hereditary mixed, 2 (BMPR1A)
  • Polyposis, juvenile intestinal (BMPR1A, SMAD4)
  • Telangiectasia, hereditary hemorrhagic, type 1 (ENG)
Heredity, heredity patterns etc.
  • AD
  • AR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined