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Interdisciplinary CompetenceMolecular Diagnostics
Know how in the analysis of genetic material.
For the benefit of patients.

IllnessLupus [erythematosus], "monogenic"; differential diagnosis

Summary

Short information

Comprehensive panel to delineate monogeic factors in the development of Lupus erythematosus comprising 13 curated core candidate genes and altogether 52 curated genes according to the clinical signs

ID
LP8586
Number of genes
40 Accredited laboratory test
Examined sequence length
12,8 kb (Core-/Core-canditate-Genes)
61,4 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
C1QB762NM_000491.5AR
C1R1884NM_001733.7AD
C1S2067NM_201442.4AR
C22259NM_000063.6AR
DNASE1L3828NM_001256560.2AR
PSMA3779NM_002788.4n.k.
PSMB4802NM_002796.3digenisch, AR
PSMB8831NM_148919.4AR
PSMB9660NM_002800.5AR, digenisch
RNASEH2A900NM_006397.3AR
TREX1945NM_033629.6AD, AR
ACP5978NM_001111034.3AR
ADAR2796NM_001111.5AD
C1QA738NM_015991.4AR
C1QC738NM_001114101.3AR
C55031NM_001735.3AR
C62805NM_000065.5AR
C72532NM_000587.4AR, Sus
C8A1755NM_000562.3AR
C8B1776NM_000066.4AR
C91680NM_001737.5AR
CYBB1713NM_000397.4XL
DNASE1849NM_005223.4AD, Sus
FAS1008NM_000043.6AD
FASLG846NM_000639.3n.k.
IFIH13078NM_022168.4AD
IKZF11560NM_006060.6n.k.
ISG15498NM_005101.4AR
KRAS567NM_004985.5AD
MAN2B13036NM_000528.4AR
PEPD1482NM_000285.4AR
PRKCD2031NM_006254.4AR
PTPN111782NM_002834.5AD
RAG21584NM_000536.4AR
RNASEH2B939NM_024570.4AR
RNASEH2C495NM_032193.4AR
SAMHD11881NM_015474.4AR, AD, Sus
SHOC21749NM_007373.4AD
SLC7A71536NM_001126105.3AR
STING11140NM_198282.4AD

Informations about the disease

Clinical Comment

Lupus erythematosus is a complex multisystem and a heterogenous inflammatory autoimmune disorder with the potential involvement of many organs (kidneys, skin, joints, lungs, cardiovascular system, central nervous system, hematopoietic system) and variable course. Multiple genetic variants associated with lupus susceptibility have been identified through GWAS. Support for a genetic components in lupus comes from concordance rates in monozygotic and dizygotic twins (24 vs. 2%. Viral infections + UV light may be involved. Patients with childhood onset present with more severe phenotype with increased frequencies of glomerulonephritis, cytopenias, neuropsychiatric disease, cutaneous manifestations, anti-dsDNA antibodies, hemolytic anemia. "Monogenic" lupus is early in life (<5 y.) and severe.

 

Synonyms
  • Alias: Systemic lupus erythematodes, SLE
  • Allelic: Chronic granulomatous disease, X-linked (CYBB)
  • Allelic: Dyschromatosis symmetrica hereditaria (ADAR)
  • Allelic: Keratosis linearis with ichthyosis congenita + sclerosing keratoderma (POMP)
  • Allelic: Lung cancer, susceptibility to (FASLG)
  • Allelic: Omenn syndrome (RAG2)
  • Allelic: Singleton-Merten syndrome 1 (IFIH1)
  • Allelic: Squamous cell carcinoma, burn scar-related, somatic (FAS)
  • Sympt.: Chronic atypical neutrophilic dermatosis, lipodystrophy, elevated temperature
  • Aicardi-Goutieres syndrome 1, AD, AR (TREX1)
  • Aicardi-Goutieres syndrome 2 (RNASEH2B)
  • Aicardi-Goutieres syndrome 3 (RNASEH2C)
  • Aicardi-Goutieres syndrome 4 (RNASEH2A)
  • Aicardi-Goutieres syndrome 5 (SAMHD1)
  • Aicardi-Goutieres syndrome 6 (ADAR)
  • Aicardi-Goutieres syndrome 7 (IFIH1)
  • Autoimmune cytopenias, recurrent infections [lit.] (NEIL3)
  • Autoimmune lymphoproliferative syndrome, type IA (FAS)
  • Autoimmune lymphoproliferative syndrome, type IB (FASLG)
  • Autoimmune lymphoproliferative syndrome, type II (CASP10)
  • Autoimmune lymphoproliferative syndrome, type III (PRKCD)
  • C1q deficiency (C1QA)
  • Chilblain lupus 1, included (TREX1)
  • Chilblain lupus 2, included (SAMHD1)
  • Combined cellular + humoral immune defects with granulomas (RAG2)
  • Immunodeficiency 31A, mycobacteriosis, AD (STAT1)
  • Immunodeficiency 31B, mycobacterial and viral infections, AR (STAT1)
  • Immunodeficiency 31C, chronic mucocutaneous candidiasis, AD (STAT1)
  • Immunodeficiency 34, mycobacteriosis, XL (CYBB)
  • Immunodeficiency 38 (ISG15)
  • Immunodeficiency, common variable, 13 (IKZF1)
  • Immunodeficiency, common variable, 7 (CR2)
  • Inflammatory bowel disease 21 (PTPN2)
  • Lupus nephritis, susceptibility to (FCGR2A)
  • Mannosidosis, alpha-, types I, II (MAN2B1)
  • Noonan syndrome-like with loose anagen hair 1 (SHOC2)
  • Prolidase deficiency (PEPD)
  • Proteasome-associated autoinflammatory syndrome 1 + digenic forms (PSMB8)
  • Proteasome-associated autoinflammatory syndrome 1, digenic (PSMA3)
  • Proteasome-associated autoinflammatory syndrome 2 (POMP)
  • Proteasome-associated autoinflammatory syndrome 3 + digenic forms (PSMB4)
  • Proteasome-associated autoinflammatory syndrome 3, digenic (PSMB9)
  • RAS-associated autoimmune leukoproliferative disorder (KRAS)
  • STING-associated vasculopathy, infantile-onset (STING1)
  • Severe combined immunodeficiency, B cell-negative (RAG2)
  • Spondyloenchondrodysplasia with immune dysregulation (ACP5)
  • Systemic lupus erythematosus 16 (DNASE1L3)
  • Systemic lupus erythematosus, resistance to (TLR5)
  • Systemic lupus erythematosus, susceptibility to (CTLA4, DNASE1, FCGR2B, PTPN22, TREX1)
  • Systemic lupus erythematosus, susceptibility to, 1 (TLR5)
  • Systemic lupus erythematosus, susceptibility to, 10 (IRF5)
  • Systemic lupus erythematosus, susceptibility to, 11 (STAT4)
  • Systemic lupus erythematosus, susceptibility to, 2 (PDCD1)
  • Systemic lupus erythematosus, susceptibility to, 6 (ITGAM)
  • Systemic lupus erythematosus, susceptibility to, 9 (CR2)
Heredity, heredity patterns etc.
  • AD
  • AR
  • Sus
  • XL
  • digenisch
  • n.k.
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined