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IllnessPOI - Premature Ovarian Insufficiency, differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for POI [replacing POF] comprising 1 guideline-curated core gene, furthermore 14 core candidate genes and altogether 51 curated genes, whereby in the latter two gene categories several are also mentioned in the 2015 guidelines

The FSHR polymorphism p.Asn680Ser may be relevant with regard to dose calculation prior to ovarian stimulation and is therefore reported if explicitly requested. doi: 10.1007/s00129-021-04785-6

ID
PP0200
Number of genes
48 Accredited laboratory test
Examined sequence length
28,5 kb (Core-/Core-canditate-Genes)
97,4 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

Sanger

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
AIRE1638NM_000383.4AD, AR
BMP151179NM_005448.2XL
CLPP834NM_006012.4AR
EIF2B52166NM_003907.3AR
FMR11899NM_002024.6XL
FOXL21131NM_023067.4AD
FSHB390NM_000510.4AR
FSHR2088NM_000145.4AR
GALT1140NM_000155.4AR
HFM14308NM_001017975.6AR
MCM82523NM_032485.6AR
NOBOX2076NM_001080413.3AD
NR5A11386NM_004959.5AD
STAG33678NM_012447.4AR
TWNK2055NM_021830.5AR
AARS22958NM_020745.4AR
BMPR1B1509NM_001203.3AD
BUB1B3153NM_001211.6AD
C14orf391890NM_174978.3AR
CYP17A11527NM_000102.4AR
CYP19A11512NM_031226.3AR
DACH21860NM_053281.3XL
DIAPH23306NM_006729.5XL
EIF2B41569NM_015636.4XL
EIF4ENIF13006NM_001164501.2AD
FANCM6147NM_020937.4AR
FIGLA660NM_001004311.3AD
GDF91365NM_005260.6AD, AR
HARS21521NM_012208.4AR
HSD17B42211NM_000414.4AR
LARS22712NM_015340.4AR
LMNA1995NM_170707.4AD
MCM93432NM_017696.3AR
MSH42811NM_002440.4AR
MSH52505NM_002441.5AR
NANOS3593NM_001098622.3AD
NOG699NM_005450.6AD
NUP1072778NM_020401.4AR
PGRMC1588NM_006667.5XLR
PMM2741NM_000303.3AR
POF1B1770NM_024921.4XLR
POLG3720NM_002693.3AR, AD
POU5F11083NM_002701.6AD
PSMC3IP654NM_016556.4AR
SGO23854NM_001160033.1AR
SOHLH11164NM_001101677.2AR
SYCE11109NM_001143763.2AR
SYCP2L2474NM_001040274.3AR

Informations about the disease

Clinical Comment

Premature or primary ovarian insufficiency (POI) is a clinical syndrome with loss of ovarian activity before the age of 40. POI is characterised by menstrual disorders (amenorrhoea/oligomenorrhoea) with increased gonadotropins and low oestradiol, and has a prevalence of 1%. POI occurs in (pre-)pubescent girls and women from the second decade onwards. The consequences of POI include reduced life expectancy, mainly due to cardiovascular disease and reduced bone density. Negative effects can affect psychological well-being, quality of life and sexuality. Hormone replacement therapy is therefore sometimes indicated after specific problems (Turner syndrome, breast cancer, etc.) have been considered. After karyotype and fragile X-premutation tests, molecular genetic analyses include a number of autosomal and X-linked genes. While 20% of women with fragile X-premutations develop POI, the detection rate in the other genes is lower. Therefore, a normal DNA result does not exclude genetic POI causes.

Reference: https://www.eshre.eu/Guidelines-and-Legal/Guidelines/Management-of-premature-ovarian-insufficiency.aspx

The FSHR polymorphism p.Asn680Ser may be relevant with regard to dose calculation prior to ovarian stimulation and is therefore reported if explicitly requested. doi: 10.1007/s00129-021-04785-6

 

Synonyms
  • Alias: Follicular stimulating hormone-resistant ovaries
  • Alias: Hypergonadotropic ovarian dysgenesis
  • Alias: Ovarian insufficiency
  • Alias: POI (POF) - premature ovarian insufficiency (failure)
  • Alias: Vorzeitige Ovarialinsuffizienz
  • Alle3lic: Mitochondrial DNA depletion syndrome 7 [hepatocerebral type] (TWNK)
  • Allelic: 46XX sex reversal 4 (NR5A1)
  • Allelic: 46XY sex reversal 3 (NR5A1)
  • Allelic: Acromesomelic dysplasia, Demirhan type (BMPR1B)
  • Allelic: Adrenocortical insufficiency (NR5A1)
  • Allelic: Aromatase excess syndrome (CYP19A1)
  • Allelic: Blepharophimosis, epicanthus inversus + ptosis, type 1 + 2 (FOXL2)
  • Allelic: Brachydactyly, type A1, D + A2 (BMPR1B)
  • Allelic: Brachydactyly, type B2 (NOG)
  • Allelic: Cardiomyopathy, dilated, 1A (LMNA)
  • Allelic: Charcot-Marie-Tooth disease, type 2B1 (LMNA)
  • Allelic: Combined oxidative phosphorylation deficiency 8 (AARS2)
  • Allelic: D-bifunctional protein deficiency (HSD17B4)
  • Allelic: Emery-Dreifuss muscular dystrophy 2, AD (LMNA)
  • Allelic: Emery-Dreifuss muscular dystrophy 3, AR (LMNA)
  • Allelic: Galloway-Mowat syndrome 7 (NUP107)
  • Allelic: Heart-hand syndrome, Slovenian type (LMNA)
  • Allelic: Hutchinson-Gilford progeria (LMNAA)
  • Allelic: Leukoencephalopathy with vanishing white matter (EIF2B5, EIF2B5)
  • Allelic: Leydig cell adenoma, somatic, with precocious puberty (LHCGR)
  • Allelic: Leydig cell hypoplasia with hypergonadotropic hypogonadism (LHCGR)
  • Allelic: Leydig cell hypoplasia with pseudohermaphroditism (LHCGR)
  • Allelic: Lipodystrophy, familial partial, type 2 (LMNA)
  • Allelic: Mandibuloacral dysplasia (LMNA)
  • Allelic: Mitochondrial DNA depletion syndrome 4A {Alpers type] (POLG)
  • Allelic: Mitochondrial DNA depletion syndrome 4B [MNGIE type] (POLG)
  • Allelic: Mitochondrial recessive ataxia syndrome [includes SANDO + SCAE] (POLG)
  • Allelic: Mosaic variegated aneuploidy syndrome 1 (BUB1B)
  • Allelic: Multiple synostoses syndrome 1 (NOG)
  • Allelic: Muscular dystrophy, congenital (LMNA)
  • Allelic: Nephrotic syndrome, type 11 (NUP107)
  • Allelic: Non-obstructive azoospermia (MSH4)
  • Allelic: Ovarian response to FSH stimulation (FSHR)
  • Allelic: Precocious puberty, male (LHCGR)
  • Allelic: Premature chromatid separation trait (BUB1B)
  • Allelic: Progressive external ophthalmoplegia with mitochondrial DNA deletions, AD 3 (TWNK)
  • Allelic: Progressive external ophthalmoplegia, AD 1 (POLG)
  • Allelic: Progressive external ophthalmoplegia, AR 1 (POLG)
  • Allelic: Restrictive dermopathy, lethal (LMNA)
  • Allelic: Spermatogenic failure 1 (SYCE1)
  • Allelic: Spermatogenic failure 32 (SOHLH1)
  • Allelic: Spermatogenic failure 52 (C14orf39)
  • Allelic: Spermatogenic failure 8 (NR5A1)
  • Allelic: Spinal and bulbar muscular atrophy of Kennedy (AR CAG)
  • Allelic: Stapes ankylosis with broad thumbs + toes (NOG)
  • Allelic: Symphalangism, proximal, 1A (NOG)
  • Allelic: Tarsal-carpal coalition syndrome (NOG)
  • 17,20-lyase deficiency, isolated (CYP17A1)
  • 17-alpha-hydroxylase/17,20-lyase deficiency (CYP17A1)
  • Allelic: Hypogonadotropic hypogonadism 23 +/- anosmia (LHB)
  • Allelic: Leydig cell hypoplasia with hypergonadotropic hypogonadism (LHCGR)
  • Allelic: Leydig cell hypoplasia with pseudohermaphroditism (LHCGR)
  • Allelic: Precocious puberty, male (LHCGR)
  • Aromatase deficiency (CYP19A1)
  • Autoimmune polyendocrinopathy, type I, with/-out reversible metaphyseal dysplasia (AIRE)
  • Congenital disorder of glycosylation, type Ia (PMM2)
  • Galactosemia (GALT)
  • Hypogonadotropic hypogonadism 24 without anosmia (FSHB)
  • Leukoencephalopathy, progressive, with ovarian failure (AARS2)
  • Luteinizing hormone resistance, female (LHCGR)
  • Malouf syndrome (LMNA)
  • Muscular dystrophy, congenital hearing loss + ovarian insufficiency syndrome (GGPS1)
  • Ovarian dysgenesis 1 (FSHR)
  • Ovarian dysgenesis 2 (BMP15)
  • Ovarian dysgenesis 3 (PSMC3IP)
  • Ovarian dysgenesis 4 (MCM9)
  • Ovarian dysgenesis 5 (SOHLH1)
  • Ovarian dysgenesis 6 (NUP107)
  • Ovarian hyperstimulation syndrome (FSHR)
  • Ovarioleukodystrophy (EIF2B4, EIF2B5)
  • Perrault syndrome 1 (HSD17B4)
  • Perrault syndrome 3 (CLPP)
  • Perrault syndrome 5 (TWNK)
  • Perrault syndrome [panelapp] (SGO2)
  • Premature ovarian failure 1 (POF1; FMR1, 55-200 CCG repeats)
  • Premature ovarian failure 10 (MCM8)
  • Premature ovarian failure 12 (SYCE1)
  • Premature ovarian failure 13 (MSH5)
  • Premature ovarian failure 14 (GDF9)
  • Premature ovarian failure 18 (C14orf39)
  • Premature ovarian failure 2A (DIAPH2)
  • Premature ovarian failure 2B (POF1B)
  • Premature ovarian failure 3 (FOXL2)
  • Premature ovarian failure 4 (BMP15)
  • Premature ovarian failure 5 (NOBOX)
  • Premature ovarian failure 6 (FIGLA)
  • Premature ovarian failure 7 (NR5A1)
  • Premature ovarian failure 8 (STAG3)
  • Premature ovarian failure 9 (HFM1)
  • Premature ovarian failure [panelapp] (BUB1B)
  • Premature ovarian failure [panelapp] (EIF4ENIF1)
  • Premature ovarian failure [panelapp] (KHDRBS1)
  • Premature ovarian insufficiency [panelapp] (BMPR1B)
  • Premature ovarian insufficiency [panelapp] (DACH2)
  • Premature ovarian insufficiency [panelapp] (PGRMC1)
  • Primary ovarian failure [MONDO:0005387] (MSH4)
  • Primary ovarian insufficiency [panelapp] (EIF4ENIF1)
  • Primary ovarian insufficiency [panelapp] (NANOS3)
  • Primary ovarian insufficiency [panelapp] (NOG)
  • Primary ovarian insufficiency [panelapp] (POLR2C)
  • Primary ovarian insufficiency [panelapp] (POLR3H)
  • Primary ovarian insufficiency [panelapp] (POU5F1)
  • Primary ovarian insufficiency [panelapp] (SOHLH2)
  • Primary ovarian insufficiency [panelapp] (SYCP2L)
  • Retinal dystrophy with/-out extraocular anomalies (RCBTB1)
Heredity, heredity patterns etc.
  • AD
  • AR
  • XL
  • XLR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

Test-Stärken

  • DAkkS-akkreditiertes Labor
  • EU-Richtlinie für IVD in Umsetzung
  • Qualitäts-kontrolliert arbeitendes Personal
  • Leistungsstarke Sequenzierungstechnologien, fortschrittliche Target-Anreicherungsmethoden und Präzisions-Bioinformatik-Pipelines sorgen für überragende analytische Leistung
  • Sorgfältige Kuratierung klinisch relevanter und wissenschaftlich begründeter Gen-Panels
  • eine Vielzahl nicht Protein-kodierender Varianten, die in unseren klinischen NGS-Tests mit erfasst werden
  • unser strenges Variantenklassifizierungsschema nach ACMG-Kriterien
  • unser systematischer klinischer Interpretations-Workflow mit proprietärer Software ermöglicht die genaue und nachvollziehbare Verarbeitung von NGS-Daten
  • unsere umfassenden klinischen Aussagen

Testeinschränkungen

  • Gene mit eingeschränkter Abdeckung werden gekennzeichnet
  • Gene mit kompletten oder partiellen Duplikationen werden gekennzeichnet
  • es wird angenommen, dass ein Gen suboptimal abgedeckt ist, wenn >90% der Nukleotide des Gens bei einem Mapping-Qualitätsfaktor von >20 (MQ>20) nicht abgedeckt sind
  • die Sensitivität der Diagnostik zur Erkennung von Varianten mit genannten Testeinschränkungen ist möglicherweise begrenzt bei:
  • Gen-Konversionen
  • komplexe Inversionen
  • Balancierte Translokationen
  • Mitochondriale Varianten
  • Repeat-Expansionen, sofern nicht anders dokumentiert
  • nicht kodierende Varianten, die Krankheiten verursachen, die von diesem Panel nicht mit abgedeckt werden
  • niedriger Mosaik-Status
  • Repeat-Blöcke von Mononukleotiden
  • Indels >50bp (Insertionen-Deletionen)
  • Deletionen oder Duplikationen einzelner Exons
  • Varianten innerhalb von Pseudogenen
  • die analytische Sensitivität kann geringer ausfallen werden, wenn die DNA nicht von amedes genetics extrahiert wurde

Laboratory requirement

  • Die in grün gezeigten Gene sind kuratiert und werden als Gen-Panel untersucht. Eine Erweiterung des Panels (blau gezeigte Gene, jeweils ebenfalls kuratiert) kann auf Anfrage erfolgen. Sofern unter "Erweitertes Panel" ein Minuszeichen angezeigt wird, sind nur Core-/Basis-Gene verfügbar.

  • Für die Anforderung einer genetischen Untersuchung senden Sie uns bitte die Krankheits-ID auf einem Überweisungsschein. Bitte die Material-Angabe beachten.

  • Für privat versicherte Patienten empfehlen wir einen Antrag auf Kostenübernahme bei der Krankenversicherung.

  • Die Untersuchung wird auch für Selbstzahler angeboten.