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Know how in the analysis of genetic material.
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IllnessPränataler Hydrozephalus, Differentialdiagnose

Summary

Short information

Comprehensive differential diagnostic panel for Prenatal Hydrocephalus comprising 78 and altogether 116 curated genes according to the clinical signs

ID
PP0010
Number of genes
83 Accredited laboratory test
Examined sequence length
0,0 kb (Core-/Core-canditate-Genes)
232,5 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Test material
  • Amniotic fluid (after amnocentesis)
  • Chorionic villus
  • Umbilical cord blood
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
AKT31440NM_005465.7AD
AP1S2474NM_003916.5XLR
ARSB1602NM_000046.5AR
B3GALNT21503NM_152490.5AR
B3GLCT1497NM_194318.4AR
B4GAT11248NM_006876.3AR
B9D2528NM_030578.4AR
BLTP115018NM_015312.4AR
BUB1B3153NM_001211.6AR
CC2D2A4863NM_001080522.2AR
CCDC88C6087NM_001080414.4AR
CCND2870NM_001759.4AD
CENPF9403NM_016343.4AR
CEP832106NM_001042399.2AR
COL4A15010NM_001845.6AD
CRB23858NM_173689.7AR
CRPPA1356NM_001101426.4AR
DAG12688NM_004393.6AR
DENND5A3864NM_015213.4AR
DHCR241551NM_014762.4AR
EBP693NM_006579.3XL
EEF22577NM_001961.4AD
EML12448NM_004434.3AR
ERF1647NM_006494.4AD
FAM20C1755NM_020223.4AR
FANCB2580NM_001018113.3XLR
FGFR12469NM_023110.3AD
FGFR22466NM_000141.5AD
FGFR32421NM_000142.5AD
FKRP1488NM_024301.5AR
FKTN1386NM_001079802.2AR
FLNA7920NM_001456.4XL
FLVCR21581NM_017791.3AR
GFAP1299NM_002055.5AD
GLI34743NM_000168.6AD
GPSM22055NM_013296.5AR
GUSB1956NM_000181.4AR
HYLS1900NM_145014.3AR
IDS1653NM_000202.8XLR
KIAA05865005NM_001244189.2AR
KIDINS2205431NM_020738.4AD
L1CAM3774NM_000425.5XLR
LAMB15361NM_002291.3AR
LARGE12271NM_004737.7AR
MAN2B13036NM_000528.4AR
MPDZ6126NM_003829.5AR
MYMK671NM_001080483.3AR
NF18457NM_001042492.3AD
NF21788NM_000268.4AD
NSD18091NM_022455.5AD
OSTM11005NM_014028.4AR
PIK3CA3207NM_006218.4AD
PIK3R22187NM_005027.4AD
PLG2433NM_000301.5AR
POMGNT11983NM_017739.4AR
POMGNT21743NM_032806.6AR
POMK1053NM_032237.5AR
POMT12244NM_007171.4AR
POMT22253NM_013382.7AR
PPP2R5D1356NM_006245.4AD
PTCH14344NM_000264.5AD
PTEN1212NM_000314.8AD
RNF125699NM_017831.4AD
RPS6KA32223NM_004586.3XL
RXYLT11355NM_014254.3AR
SKI2187NM_003036.4AD
SMARCC13318NM_003074.4AD
SNX10606NM_001199835.1AR
STRADA1185NM_001003786.3AR
SUFU1455NM_016169.4AR
SUMF11125NM_182760.4AR
TBC1D324318NM_152730.6AR
TCF122121NM_207036.2AD
TCIRG12493NM_006019.4AR
TNFRSF11A1851NM_003839.4AR
TRIM712611NM_001039111.3AD
TWIST1609NM_000474.4AD
USP9X7713NM_001039590.3XL
VHL642NM_000551.4AD
WASHC53480NM_014846.4AR
ZBTB202226NM_001164342.2AD
ZIC21599NM_007129.5AD
ZIC31404NM_003413.4XLR

Informations about the disease

Clinical Comment

Prenatal hydrocephalus (HC) is usually inferred by the observed ventriculomegaly (VM) on prenatal ultrasound, e.g. due to increased intracranial pressure, usually caused by obstruction, eventually leading to progressive macrocephaly. The terms HC and VM are often used interchangeably. Sonographic signs encompass a heterogeneous spectrum of conditions, ranging from pathologic processes with serious consequences for neurologic development to normal changes. Causes of impaired CSF circulation and obstruction include aqueductal and monro-foraminal stenosis, neural tube defects, Dandy-Walker and primary brain malformations such as holoprosencephaly, cortical developmental and corpus callosum abnormalities. In addition to chromosomal defects (trisomies 21, 18, 13; complex aberrations etc.) and copy number variants, genetic HC syndromes are also caused by various single gene mutations. Disorders of neuronal adhesion, vesicle transport and Wnt signaling pathways are to be named in this context as well as dystroglycanopathies, ciliopathies, RASopathies, lysosomal storage diseases, impaired growth/transcription factor expression and many complex genetic syndromes. For example, the L1 syndrome covers a broad spectrum ranging from severe to mild and includes three clinical phenotypes: X-linked hydrocephalus with stenosis of the Sylvian aqueduct, MASA syndrome (Mental retardation, Aphasia, Spastic paraplegia, Adducted thumbs) including X-linked complicated hereditary spastic paraplegia type 1 and finally X-linked complicated corpus callosum agenesis. All phenotypes can be observed in affected individuals in the same family, reflecting the variability of the syndrome. In addition to environmental forms and multifactorial causes, all classical inheritance patterns are observed in monogenic HC. Despite of applying particularly extensive gene panels, the DNA diagnostic yield is limited, also largely depending on the clinical workup of the case and/or affected family. Thus, a negative molecular genetic result excludes the clinical diagnosis by no means.

References: https://www.ncbi.nlm.nih.gov/books/NBK1484/

https://www.annualreviews.org/doi/pdf/10.1146/annurev-neuro-070815-014023

 

Synonyms
  • Allelic: Chondrodysplasia punctata, XLD (EBP)
  • Allelic: Osteolysis, familial expansile (TNFRSF11A)
  • Allelic: Paget disease of bone 2, early-onset (TNFRSF11A)
  • Acrocallosal syndrome (KIF7)
  • Al-Gazali-Bakalinova syndrome (KIF7)
  • Alexander disease (GFAP)
  • Alkuraya-Kucinskas syndrome (KIAA1109)
  • Angiopathy, hereditary, with nephropathy, aneurysms + muscle cramps (COL4A1)
  • Antley-Bixler syndrome without genital anomalies or disordered steroidogenesis (FGFR2)
  • Apert syndrome (FGFR2)
  • Band heterotopia (EML1)
  • Bardet-Biedl syndrome 13 (MKS1)
  • Basal cell nevus syndrome (PTCH2)
  • Brain small vessel disease with/-out ocular anomalies (COL4A1)
  • CLAPO syndrome, somatic (PIK3CA)
  • CLOVE syndrome, somatic (PIK3CA)
  • COACH syndrome (CC2D2A)
  • COACH syndrome 1 (TMEM67)
  • COACH syndrome 3 (RPGRIP1L)
  • CRASH syndrome (L1CAM)
  • Carey-Fineman-Ziter syndrome (MYMK)
  • Caudal regression syndrome (VANGL1)
  • Cerebellar ataxia, impaired intellectual development, dysquilibrium syndrome 2 (WDR81)
  • Chitayat syndrome (ERF)
  • Chondrodysplasia + platyspondyly, distinctive brachydactyly, hydrocephaly, microphthalmia (HDAC6)
  • Chudley-McCullough syndrome (GPSM2)
  • Ciliary dyskinesia, primary, 1, with or without situs inversus (DNAI1)
  • Coffin-Lowry syndrome (RPS6KA3)
  • Coffin-Siris syndrome 3 (SMARCB1)
  • Cole-Carpenter syndrome 1 (P4HB)
  • Cole-Carpenter syndrome 2 (SEC24D)
  • Congenital hydrocephalus, aqueductal stenosis, septal agenesis [panelapp] (SMARCC1)
  • Corpus callosum abnormalities [panelapp] (SMARCC1)
  • Craniosynostosis 1 (TWIST1)
  • Craniosynostosis 3 (TCF12)
  • Craniosynostosis 4 (ERF)
  • Craniosynostosis, nonspecific (FGFR2)
  • Crouzon syndrome (FGFR2)
  • Desmosterolosis (DHCR24)
  • Developmental + epileptic encephalopathy 1
  • Dysplasminogenemia (PLG)
  • Ellis-van Creveld syndrome (EVC2)
  • Endocrine-cerebroosteodysplasia (CILK1)
  • Epileptic encephalopathy, early infantile, 49 (DENND5A)
  • Erythrocytosis, familial, 2 (VHL) 3
  • Fanconi anemia, complementation group B (FANCB)
  • Focal segmental glomerulosclerosis 9 (CRB2)
  • Greig cephalopolysyndactyly syndrome (GLI3)
  • Hartsfield syndrome (FGFR1)
  • Heterotaxy, visceral, 1, XL (ZIC3)
  • Holoprosencephaly 3 (SHH)
  • Holoprosencephaly 5 (ZIC2)
  • Holoprosencephaly 7 (PTCH1)
  • Hydranencephaly with abnormal genitalia (ARX)
  • Hydrocephalus due to aqueductal stenosis (L1CAM)
  • Hydrocephalus with Hirschsprung disease (L1CAM)
  • Hydrocephalus with cong. idiopathic intestinal pseudoobstruction (L1CAM)
  • Hydrocephalus, cong., 1 (CCDC88C)
  • Hydrocephalus, congenital communicating, 1 (TRIM71)
  • Hydrocephalus, congenital, 2, with/-out brain or eye anomalies (MPDZ)
  • Hydrocephalus, congenital, 3, with brain anomalies (WDR81)
  • Hydrolethalus syndrome (HYLS1)
  • Hydrolethalus syndrome 2 (KIF7)
  • Intellectual developmental disorder, XL 29 (ARX)
  • Jackson-Weiss syndrome (FGFR1, FGFR2)
  • Joubert syndrome 12 (KIF7)
  • Joubert syndrome 14 (TMEM237)
  • Joubert syndrome 16 (TMEM138)
  • Joubert syndrome 17 (CPLANE1)
  • Joubert syndrome 2 (TMEM216)
  • Joubert syndrome 20 (TMEM231)
  • Joubert syndrome 23 (KIAA0586)
  • Joubert syndrome 24 (TCTN2)
  • Joubert syndrome 27 (B9D1)
  • Joubert syndrome 28 (MKS1)
  • Joubert syndrome 32 (SUFU)
  • Joubert syndrome 34 (B9D2)
  • Joubert syndrome 5 (CEP290)
  • Joubert syndrome 6 (TMEM67)
  • Joubert syndrome 7 (RPGRIP1L)
  • Joubert syndrome 9 (CC2D2A)
  • LADD syndrome (FGFR2, FGFR3)
  • Lhermitte-Duclos syndrome (PTEN)
  • Lissencephaly 5 (LAMB1)
  • Lissencephaly, XL 2 (ARX)
  • Lymphangioleiomyomatosis (TSC1)
  • MASA syndrome (L1CAM)
  • MEND: Male Ebp disorder with Neurologic Defects syndrome (EBP)
  • Macrocephaly/autism syndrome (PTEN)
  • Mannosidosis, alpha-, types I + II MAN2B1)
  • Meckel syndrome 1 (MKS1)
  • Meckel syndrome 11 (TMEM231)
  • Meckel syndrome 2 (TMEM216)
  • Meckel syndrome 3 (TMEM67)
  • Meckel syndrome 5 (RPGRIP1L)
  • Meckel syndrome 6 (CC2D2A)
  • Meckel syndrome 7 (NPHP3)
  • Meckel syndrome 8 (TCTN2)
  • Megalencephaly-capillary malformation-polymicrogyria syndrome, somatic (PIK3CA)
  • Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1 (PIK3R2)
  • Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2 (AKT3)
  • Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 (CCND2)
  • Mental retardation, AD 35 (PPP2R5D)
  • Mental retardation, XL 19 (RPS6KA3)
  • Mental retardation, XL 99 (USP9X)
  • Mental retardation, XL 99, syndromic, female-restricted (USP9X)
  • Mental retardation, XL syndromic 5 (AP1S2)
  • Microangiopathy + leukoencephalopathy, pontine, AD (COL4A1)
  • Microphthalmia with coloboma 5 (SHH)
  • Mosaic variegated aneuploidy syndrome 1 (BUB1B)
  • Mucopolysaccharidosis II (IDS)
  • Mucopolysaccharidosis VII (GUSB)
  • Mucopolysaccharidosis type VI [Maroteaux-Lamy] (ARSB)
  • Muenke syndrome (FGFR3)
  • Multiple sulfatase deficiency (SUMF1)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anom.), A13 [MONDO:0014120] (B3GNT2)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 1 (POMT)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 10 (RXYLT1)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 11 (B3GALNT2)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 12 (POMK)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 13 (B4GAT1)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 2 (POMT2)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 3 (POMGNT1)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 4 (FKTN)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 5 (FKRP)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 6 (LARGE1)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 7 (CRPPA)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 8 (POMGNT2)
  • Muscular dystrophy-dystroglycanopathy (cong. with brain + eye anomalies), type A, 9 (DAG1)
  • Muscular dystrophy-dystroglycanopathy (cong. with mental retardation), type B, 1 (POMT)
  • Muscular dystrophy-dystroglycanopathy (cong. with mental retardation), type B, 2 (POMT2)
  • Muscular dystrophy-dystroglycanopathy (cong. with mental retardation), type B, 3 (POMGNT1)
  • Muscular dystrophy-dystroglycanopathy (cong. with mental retardation), type B, 6 (LARGE1)
  • Muscular dystrophy-dystroglycanopathy (cong. with/-out mental retardation), type B, 5 (FKRP)
  • Muscular dystrophy-dystroglycanopathy (cong. without mental retardation), type B, 4 (FKTN)
  • Muscular dystrophy-dystroglycanopathy (limb-girdle) type C, 8 (POMGNT2)
  • Myotubular myopathy, XL ((MTM1)
  • Nephronophthisis 11 (TMEM67)
  • Nephronophthisis 18 (CEP83)
  • Nephronophthisis 3 (NPHP3)
  • Neural tube defects (VANGL2)
  • Neural tube defects, susceptibility to (VANGL1)
  • Neurofibromatosis, type 1 (NF1)
  • Neurofibromatosis, type 2 (NF2)
  • Orofaciodigital syndrome VI (CPLANE1)
  • Orofaciodigital syndrome [MONDO:0015375] (TBC1D32)
  • Osteopetrosis, AR (TCIRG1)
  • Osteopetrosis, AR 5 (OSTM1)
  • Osteopetrosis, AR 7 (TNFRSF11A)
  • Osteopetrosis, AR 8 (SNX10)
  • Otopalatodigital syndrome, type I + II (FLNA)
  • Pallister-Hall syndrome (GLI3)
  • Partington syndrome (ARX)
  • Peters-plus syndrome (B3GLCT)
  • Pfeiffer syndrome (FGFR1, FGFR2)
  • Pheochromocytoma (VHL)
  • Plasminogen deficiency, type I (PLG)
  • Polyhydramnios, megalencephaly + symptomatic epilepsy (STRADA)
  • Primrose syndrome (ZBTB20)
  • Proliferative vasculopathy + hydranencephaly-hydrocephaly syndrome (FLVCR2)
  • Proud syndrome (ARX)
  • RHYNS syndrome (TMEM67)
  • Raine syndrome (FAM20C)
  • Renal-hepatic-pancreatic dysplasia 1 (NPHP3)
  • Ritscher-Schinzel syndrome 1 (WASHC5)
  • Robinow-Sorauf syndrome (TWIST1)
  • SADDAN (FGFR3)
  • Saethre-Chotzen syndrome (FGFR2)
  • Saethre-Chotzen syndrome with/-out eyelid anomalies (TWIST1)
  • Schizencephaly (SHH)
  • Short-rib thoracic dysplasia 14 with polydactyly (KIAA0586)
  • Shprintzen-Goldberg syndrome (SKI)
  • Single median maxillary central incisor (SHH)
  • Sotos syndrome 1 (NSD1)
  • Spastic paraplegia, intellectual disability, nystagmus + obesity (KIDINS220)
  • Spinocerebellar ataxia 26 (EEF2)
  • Stromme syndrome (CENPF)
  • Sweeney-Cox syndrome (TWIST1)
  • Tenorio syndrome (RNF125)
  • Tetra-amelia syndrome 1 (WNT3)
  • Tuberous sclerosis-1 (TSC1)
  • Tuberous sclerosis-2 (TSC2)
  • VACTERL association (HOXD13)
  • VACTERL association, XL (ZIC3)
  • Ventriculomegaly and arthrogryposis (KIDINS220)
  • Ventriculomegaly with cystic kidney disease (CRB2)
  • Watson syndrome (NF1)
  • Weyers acrofacial dysostosis (EVC2)
  • von Hippel-Lindau syndrome (VHL)
Heredity, heredity patterns etc.
  • AD
  • AR
  • XL
  • XLR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

Test-Stärken

  • DAkkS-akkreditiertes Labor
  • EU-Richtlinie für IVD in Umsetzung
  • Qualitäts-kontrolliert arbeitendes Personal
  • Leistungsstarke Sequenzierungstechnologien, fortschrittliche Target-Anreicherungsmethoden und Präzisions-Bioinformatik-Pipelines sorgen für überragende analytische Leistung
  • Sorgfältige Kuratierung klinisch relevanter und wissenschaftlich begründeter Gen-Panels
  • eine Vielzahl nicht Protein-kodierender Varianten, die in unseren klinischen NGS-Tests mit erfasst werden
  • unser strenges Variantenklassifizierungsschema nach ACMG-Kriterien
  • unser systematischer klinischer Interpretations-Workflow mit proprietärer Software ermöglicht die genaue und nachvollziehbare Verarbeitung von NGS-Daten
  • unsere umfassenden klinischen Aussagen

Testeinschränkungen

  • Gene mit eingeschränkter Abdeckung werden gekennzeichnet
  • Gene mit kompletten oder partiellen Duplikationen werden gekennzeichnet
  • es wird angenommen, dass ein Gen suboptimal abgedeckt ist, wenn >90% der Nukleotide des Gens bei einem Mapping-Qualitätsfaktor von >20 (MQ>20) nicht abgedeckt sind
  • die Sensitivität der Diagnostik zur Erkennung von Varianten mit genannten Testeinschränkungen ist möglicherweise begrenzt bei:
  • Gen-Konversionen
  • komplexe Inversionen
  • Balancierte Translokationen
  • Mitochondriale Varianten
  • Repeat-Expansionen, sofern nicht anders dokumentiert
  • nicht kodierende Varianten, die Krankheiten verursachen, die von diesem Panel nicht mit abgedeckt werden
  • niedriger Mosaik-Status
  • Repeat-Blöcke von Mononukleotiden
  • Indels >50bp (Insertionen-Deletionen)
  • Deletionen oder Duplikationen einzelner Exons
  • Varianten innerhalb von Pseudogenen
  • die analytische Sensitivität kann geringer ausfallen werden, wenn die DNA nicht von amedes genetics extrahiert wurde

Laboratory requirement

  • Die in grün gezeigten Gene sind kuratiert und werden als Gen-Panel untersucht. Eine Erweiterung des Panels (blau gezeigte Gene, jeweils ebenfalls kuratiert) kann auf Anfrage erfolgen. Sofern unter "Erweitertes Panel" ein Minuszeichen angezeigt wird, sind nur Core-/Basis-Gene verfügbar.

  • Für die Anforderung einer genetischen Untersuchung senden Sie uns bitte die Krankheits-ID auf einem Überweisungsschein. Bitte die Material-Angabe beachten.

  • Für privat versicherte Patienten empfehlen wir einen Antrag auf Kostenübernahme bei der Krankenversicherung.

  • Die Untersuchung wird auch für Selbstzahler angeboten.